View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448-Insertion-20 (Length: 107)
Name: NF5448-Insertion-20
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448-Insertion-20 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 2e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-46
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 8380034 - 8379941
Alignment:
| Q |
9 |
catgttcaatgatgaataaatgaaattgaaaagaaactaaaacaacacaaataatgtaagggttaagaaactgaagttaagacaattgtttggc |
102 |
Q |
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| T |
8380034 |
catgttcaatgatgaataaatgaaattgaaaagaaactaaaacaacacaaataatgtaagggttaagaaactgaagttaagacaattgtttggc |
8379941 |
T |
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Target: chr4; HSP #2
Raw Score: 70; E-Value: 4e-32
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 8371080 - 8371007
Alignment:
| Q |
34 |
ttgaaaagaaactaaaacaacacaaataatgtaagggttaagaaactgaagttaagacaattgtttggcgttca |
107 |
Q |
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| T |
8371080 |
ttgaaaagaaactaaaacaacacaaataatgtaagggttaagaaactgaagttaagacaattgtttggcattca |
8371007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 8364225 - 8364135
Alignment:
| Q |
9 |
catgttcaatgatgaataaatgaaattgaaaagaaactaaaacaacacaaataatgtaagggttaagaaactgaagttaagacaattgttt |
99 |
Q |
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||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8364225 |
catgttcaatggtgaataaatgaaatgtcaaagaaactgaaacaacacaaataatgtaagggttaagaaactgaagttaacacaattgttt |
8364135 |
T |
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