View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5448-Insertion-3 (Length: 980)

Name: NF5448-Insertion-3
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5448-Insertion-3
NF5448-Insertion-3
[»] chr7 (1 HSPs)
chr7 (8-977)||(32967138-32968115)
[»] chr2 (1 HSPs)
chr2 (595-698)||(33727818-33727921)
[»] chr4 (1 HSPs)
chr4 (585-688)||(35772720-35772823)


Alignment Details
Target: chr7 (Bit Score: 772; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 772; E-Value: 0
Query Start/End: Original strand, 8 - 977
Target Start/End: Complemental strand, 32968115 - 32967138
Alignment:
Q  8 gtttgaaaaggacactgatttttgagacatgagtgtgttttgaagaggtgaggttgtgtttttggtgattggaaatagggtttcttggaattgtgtctct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32968115 gtttgaaaaggacactgatttttgagacatgagtgtgttttgaagaggtgaggttgtgtttttggtgattggaaatagggtttcttggaattgtgtctct 32968016  T
Q  108 tctgcatgttccacttcacctaccaaagtttctgatgattctgttgaagttagtgcacattttgatttcttgtaaattcggcatagcacccaatcatcca 207  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32968015 tctgcatgttccacttcacctaccatagtttctgatgattctgttgaagttagtgcacattttgatttcttgtaaattcggcatagcacccaatcatcca 32967916  T
Q  208 actgcacaaacacaataattccaagaataacattagtctaagatacatctnnnnnnngtacgtgacactgaccacagtcaaacaacaacatcagagttta 307  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||      |||| |||||||||||||||||||||||    
T  32967915 actgcacaaatacaataattccaagaataacattagtctaagatacatctaaaaaaagtacgtgac------cacaatcaaacaacaacatcagagttta 32967822  T
Q  308 tgnnnnnnnnatgccgttgttcgactgtggcaaaactatggttgatattgcattagtcacatttaattgcgacgcgaccgcaatctaaactcaccctcat 407  Q
    ||        ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32967821 tgttttttttatgccgttgttcgactgtggcaagactatgattgatattgcattagtcacatttaattgcgacgcgaccgcaatctaaactcaccctcat 32967722  T
Q  408 ggaagaatctttgagcttaataggtttattgttgtcaagaagacgatattcatgcatgatccaattagtcttaataccctttgggggttttcctttgtaa 507  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32967721 ggaagaatctttgagcttaataggtttattgttgtcaacaagacgatattcatgcatgatccaattagtcttaataccctttgggggttttcctttgtaa 32967622  T
Q  508 aaaacaagagcctttttgacaccaataatgttctcttgtgatcgtcctcctccacatggcaatgatgccactatggtcttatcagtgccagtggctttcc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32967621 aaaacaagagcctttttgacaccaataatgttctcttgtgatcttcctcctccacatggcaatgatgccactatggtcttatcagtgccagtggctttcc 32967522  T
Q  608 aataccctgaagcagctgccctgtttggccttgcaccgtttgggtactttctatctctaggactaaaaaagtaccattctttctcaccaaatgaagcctt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32967521 aataccctgaagcagctgccctgtttggccttgcaccgtttgggtactttctatctctaggactaaaaaagtaccattctttctcaccaaatgaagcctt 32967422  T
Q  708 agctg-aaataaagaaacaacaacaaaccaaaagtaaattaaccttccacatcacacattat---------------taatataaaaaagtacatacgta 791  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||    
T  32967421 agctgaaaataaagaaaccacaacaaaccaaaagtaaattaaccttccacatcacacattattaaattaaaaaaaagtaatataaaaaagtacatacgta 32967322  T
Q  792 tattttggatccaacttataaatttatagaatacaaacctggtaaatcccaaggatccaacttataaatatcaacttcggcaatgatggaaaacaggcaa 891  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  32967321 tattttggat-caacttataaatttatagaatacaaacctggtaaatcccaaggatccaacttataaatatcaacttcagcaatgatgg-aaacaggcaa 32967224  T
Q  892 ggg-atggaggcaannnnnnncctaaggtagtgaagaatggagttctgcatcagtagggtggaacctaaaacctggtggcaaattgg 977  Q
    ||| ||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32967223 gggaatggaggcaatttttttcctaaggtagtgaagaat-gagttctgcatcagtagggtggaacctaaaacctggtggcaaattgg 32967138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 595 - 698
Target Start/End: Complemental strand, 33727921 - 33727818
Alignment:
Q  595 ccagtggctttccaataccctgaagcagctgccctgtttggccttgcaccgtttgggtactttctatctctaggactaaaaaagtaccattctttctcac 694  Q
    ||||| |||||||||||||| ||  ||||| | || ||||||||||  || ||||| ||||| |||||||| |||||||| || |||||||||||||| |    
T  33727921 ccagttgctttccaatacccagatccagctactctatttggccttgtcccatttggatacttcctatctcttggactaaagaaataccattctttctccc 33727822  T
Q  695 caaa 698  Q
    ||||    
T  33727821 caaa 33727818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 585 - 688
Target Start/End: Complemental strand, 35772823 - 35772720
Alignment:
Q  585 cttatcagtgccagtggctttccaataccctgaagcagctgccctgtttggccttgcaccgtttgggtactttctatctctaggactaaaaaagtaccat 684  Q
    ||||||||| ||||| |||||||||||||| ||||  || ||||| || ||||| || || |||||||| |||||||| || || || ||||| ||||||    
T  35772823 cttatcagttccagtagctttccaatacccagaagttgcagccctattaggcctggccccatttgggtattttctatcccttgggctgaaaaaataccat 35772724  T
Q  685 tctt 688  Q
    ||||    
T  35772723 tctt 35772720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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