View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5448-Insertion-4 (Length: 933)
Name: NF5448-Insertion-4
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448-Insertion-4 |
 | |
|
| [»] chr8 (18 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 805; Significance: 0; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 8 - 933
Target Start/End: Original strand, 15812434 - 15813360
Alignment:
| Q |
8 |
gtgtgggttttggaaggtctactgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15812434 |
gtgtgggttttggaaggtctactgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaacc |
15812533 |
T |
|
| Q |
108 |
aatgtgaataaacttcatgacttcactctcaacatacgnnnnnnngtggaatggatcgattaattctaaactttttccttcacaccagagtttccaagtc |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15812534 |
aatgtgaatacacttcatgacttcactctcaacatacgtttttttgtggaatggatcgattaattctaaactttttccttcacaccagagtttccaagtc |
15812633 |
T |
|
| Q |
208 |
tgcaaacgaatatggatatattagaaacttgagttgaaacattttgtcagataatgtaaaaatacattagtgtgttcatagcattttggatagttggctc |
307 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
15812634 |
tgcaaacgaatatggatat-ttagaaacttgagttgaaacattttgtcagataatgtaaaaatacattagtgtgttcatggcattt-ggatagttggctc |
15812731 |
T |
|
| Q |
308 |
ataatatgctattagagcccttataatagggtaggaaagcgtgtttatacattatcaatatttcgtattcaagagactctcctttgaaggcaatgttagt |
407 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15812732 |
ataatatgctattagagcctttataatagggtaggaaagcgtgtttatacattatcaatatttcatattcaagagactctcctttgaaggcaatgttagt |
15812831 |
T |
|
| Q |
408 |
gatttcataaaactataaaacaatttttggcttggaatacttgagcatttcctctctcgatcaagtatcaatttgttaatgagatgtgataaggaaaact |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15812832 |
gatttcataaaactataaaacaatttttggcttggaatacttgagcatttcctctctcgatcaagtatcaatttgttaatgagatgtgataaggaaaact |
15812931 |
T |
|
| Q |
508 |
tacatataatagaagactttgcatatgttctgaaagaaagaagtctccatttctttttccataaattatctctaacacaataactccaaagctgaaaaca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15812932 |
tacatataatagaagactttgcatatgttctgaaagaaagaagtctccatttctttttccataaattatctctaacacaagaactccaaagctgaaaaca |
15813031 |
T |
|
| Q |
608 |
tcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccac----aatataaaatcaacagaacaatgtcagttgtgtatcatgta |
703 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
15813032 |
tcggatttcactgaaaataacccagccatagcgtattctggagccatgtatccactatatatataaaatcaagagaacaatgtcagttgtgaatcatgta |
15813131 |
T |
|
| Q |
704 |
aatttttctaacatatttgttttaaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgt |
803 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15813132 |
aatttttctaacatatttgttttaaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacattgatctttttcaaatgc |
15813231 |
T |
|
| Q |
804 |
ccttgctaatcc-aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtggaagaatc |
902 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15813232 |
ccttgctaatccaaaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtgg-agaatc |
15813330 |
T |
|
| Q |
903 |
ctcatggaaggtatagaagtcctcttgcgat |
933 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
15813331 |
ctcat-gaaggtatagaagtcctcttgcgat |
15813360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 473 - 930
Target Start/End: Original strand, 15799511 - 15799975
Alignment:
| Q |
473 |
tatcaatttgttaatgagatgtgataaggaaaacttacatataatagaagactttgcatatgttctgaaagaaagaagtctccatttctttttccataaa |
572 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| || | |
|
|
| T |
15799511 |
tatcaatttgttgattagatgtgataaggaaaactcacatatagtagaagactttgcatatgttctgaaagaaagaagtcgccatttctttttccgtata |
15799610 |
T |
|
| Q |
573 |
ttatctctaacacaataactccaaagctgaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccac----aatata |
668 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
15799611 |
ttatttctaacacaagaactccaaagctgaaaacatcggatttcactgaaaataacccagccatagcgtattcaggagccatgtatccactatatatata |
15799710 |
T |
|
| Q |
669 |
aaatcaacagaacaatgtcagttgtg---tatcatgtaaatttttctaacatatttgttttaaaagagttttc---aataacccgtactaggtgccaata |
762 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| || ||||||| ||||||||| |||| ||| | | |||||| | ||||||||||||| | |
|
|
| T |
15799711 |
aaatcaacagaacaccatcagttgtgaaaaatcatgtgaaattttcta--ctatttgtttgaaaatagtgtccaataataacacatactaggtgccaaaa |
15799808 |
T |
|
| Q |
763 |
actctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatcc-aaatcagatatttttggattcatttcatcatccagaagaacattgc |
861 |
Q |
| |
|
||||||||||| ||||| |||| ||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15799809 |
actctttttgtttttgtctgacattggtctttatcaaatgttcttgccaatccaaaatctgatatttttggattcatttcatcatccagaagaacattgc |
15799908 |
T |
|
| Q |
862 |
tcgctttcagatctctgtggattactctaagtggaagaatcctcatggaaggtatagaagtcctcttgc |
930 |
Q |
| |
|
| |||||||||||||||||||||||||||||| | ||||||||||| |||||||||| | ||||||||| |
|
|
| T |
15799909 |
tggctttcagatctctgtggattactctaagtcg-agaatcctcat-gaaggtatagcaatcctcttgc |
15799975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 473 - 930
Target Start/End: Original strand, 15764076 - 15764526
Alignment:
| Q |
473 |
tatcaatttgttaatgagatgtgataaggaaaacttacatataatagaagactttgcatatgttctgaaagaaagaagtctccatttctttttccataaa |
572 |
Q |
| |
|
|||||||||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
15764076 |
tatcaatttgttgctgagatctgataaagaaa-cttacatataatagaagactttgcatatgttctgaaagaaagaattctccatttctttttccataca |
15764174 |
T |
|
| Q |
573 |
ttatctctaacacaataactccaaagctgaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccacaatataaaat |
672 |
Q |
| |
|
||| ||||| | || ||||||||| |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||| ||| ||| | |
|
|
| T |
15764175 |
ctatttctaatataagaactccaaaactgaaaacatcggatttcaccgaaaataacccagccatagcatattctggagccatgtatccactataaaaagt |
15764274 |
T |
|
| Q |
673 |
caacagaacaatgtcagttgtgtatcatgtaaatttttctaacatatttgttttaaaagagttttcaataacccgtactaggtgccaataactctttttg |
772 |
Q |
| |
|
||| |||||| | ||| ||||| ||||||| || | |||| || |||||||||| |||| | |||| | |||||||| || |||||||| |||| |
|
|
| T |
15764275 |
caatagaacattttcaattgtgaatcatgtgaaatcttct----gatatgttttaaaa-agttgcaactaacgcttactaggttccgataactctatttg |
15764369 |
T |
|
| Q |
773 |
tctttgtatgacgttgatctttttcaaatgtccttgctaatcc-aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcag |
871 |
Q |
| |
|
| ||| | ||| ||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15764370 |
tttttcttggacattgatctttttcaaatgtccttgctaacccaaaatctgatatttttggattcatttcatcatccagaagaacattgctagctttcag |
15764469 |
T |
|
| Q |
872 |
atctctgtggattactctaagtggaagaatcctcatggaaggtatagaagtcctcttgc |
930 |
Q |
| |
|
||| |||||||||||||||||| | ||||||||||| |||||||||| |||||| |||| |
|
|
| T |
15764470 |
atccctgtggattactctaagtcg-agaatcctcat-gaaggtatagcagtccttttgc |
15764526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 501 - 930
Target Start/End: Original strand, 15805084 - 15805507
Alignment:
| Q |
501 |
gaaaacttacatataatagaagactttgcatatgttctgaaagaaagaagtctccatttctttttccataaattatctctaacacaataactccaaagct |
600 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| || ||||| |||| |||||||||||| |
|
|
| T |
15805084 |
gaaaactcacatataatagaagactttgcatatgctctgaaagaaagaattcgccatttctttttccgtaaataatttctaatacaagaactccaaagct |
15805183 |
T |
|
| Q |
601 |
gaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccacaatataaaatcaacagaacaatgtcagttgtgtatcat |
700 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||| |||||||| || || | ||||||||||| ||||| |
|
|
| T |
15805184 |
aaaaacatcggatttcactgaaaataagccagccatagcatattctggagccatgtatccactgtataaaattaa---aatactgtcagttgtgaatcat |
15805280 |
T |
|
| Q |
701 |
gtaaatttttctaacatatttgttttaaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaa |
800 |
Q |
| |
|
|| || ||| || ||||||| ||| ||| | ||| |||||| | ||||||||||||| |||||||| ||| ||||| | | ||||||||||||||| |
|
|
| T |
15805281 |
gtgaaaatttata--atatttgctttgaaaaactttccaataatgcttactaggtgccaaaaactctttctgtttttgtcgggcattgatctttttcaaa |
15805378 |
T |
|
| Q |
801 |
tgtccttgctaatcc-aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtggaaga |
899 |
Q |
| |
|
| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||| |
|
|
| T |
15805379 |
tctccttgctaatccaaaatctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctctgtggattactctaagtcg-aga |
15805477 |
T |
|
| Q |
900 |
atcctcatggaaggtatagaagtcctcttgc |
930 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| |
|
|
| T |
15805478 |
atcctcat-gaaggtatagcagtccttttgc |
15805507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 473 - 933
Target Start/End: Original strand, 15697003 - 15697471
Alignment:
| Q |
473 |
tatcaatttgttaatgagatgtgataaggaaaacttacatataatagaagactttgcatatgttctgaaagaaagaagtctccatttctttttccataaa |
572 |
Q |
| |
|
||||| |||||| |||| ||||||| || ||||| ||||||||||||||||||||| ||||||||||||| | ||| || ||||| ||||||||||| | |
|
|
| T |
15697003 |
tatcagtttgttgatgaaatgtgattagccaaactcacatataatagaagactttgcctatgttctgaaagtatgaattcaccattcctttttccataca |
15697102 |
T |
|
| Q |
573 |
ttatctctaacacaataactccaaagctgaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccacaatataaaat |
672 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| | | |||| | |
|
|
| T |
15697103 |
caatttctaatacaagaactccaaagctgaaaacatcggatttcactgaaaataatccagccatagcatattctggagccatgtatccgctgtttaaagt |
15697202 |
T |
|
| Q |
673 |
caacagaacaatgtcag--------ttgtgtatcatgtaaatttttctaacatatttgttttaaaa--gagttttcaataacc-cgtactaggtgccaat |
761 |
Q |
| |
|
||| || ||| |||||| ||||| || |||| || |||||||| ||||||||| |||| ||||| |||||| | | |||||||||||||| |
|
|
| T |
15697203 |
caaaagtacattgtcagactcagagttgtgaattatgtgaacttttctaa--tatttgtttgaaaatagagttgccaataaacacttactaggtgccaat |
15697300 |
T |
|
| Q |
762 |
aactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaa-tcagatatttttggattcatttcatcatccagaagaacattg |
860 |
Q |
| |
|
|||||||||||| ||||| |||| |||| ||||||||||| |||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15697301 |
aactctttttgtttttgtctgactttgacctttttcaaatttccttgctaatccaaaatctgatattttcggattcatttcatcatccagaagaacattg |
15697400 |
T |
|
| Q |
861 |
ctcgctttcagatctctgtggattactctaagtggaagaatcctcatggaaggtatagaagtcctcttgcgat |
933 |
Q |
| |
|
|| |||||||||||||| ||||| ||||||||| | |||||| | | ||||||||| ||||||||||||||| |
|
|
| T |
15697401 |
ctggctttcagatctctatggataactctaagtcg-agaatcttggt-gaaggtataaaagtcctcttgcgat |
15697471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 10 - 323
Target Start/End: Original strand, 15804650 - 15804962
Alignment:
| Q |
10 |
gtgggttttggaaggtctactgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaaccaa |
109 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||| | ||||||||| ||||||||||| || | |||||||| |
|
|
| T |
15804650 |
gtgggttttggaaggtctactgtctcactccctagcatgctaacaacggtggacatggttggtcgatctgctgcatcttcttgtacacaaagtaaaccaa |
15804749 |
T |
|
| Q |
110 |
tgtgaataaacttcatgacttcactctcaacatacgnnnnnnngtggaatggatcgattaattctaaactttttccttcacaccagagtttccaagtctg |
209 |
Q |
| |
|
|||| ||| |||||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15804750 |
tgtgtatacacttcaagacttcactttcaatgtacattttttggtggaatggatcgattaattctaaactttttccttcacaccagagtttccaagtctg |
15804849 |
T |
|
| Q |
210 |
caaacgaatatggatatattagaaacttgagttgaaacattttgtcagataatgtaaaaatacattagtgtgttcatagcattttggatagttggctcat |
309 |
Q |
| |
|
|| | ||||||||| ||||||| ||||||||||| ||||||||| ||| || ||| |||||||||||||| ||||| ||||| ||||||||| ||| |
|
|
| T |
15804850 |
catataaatatggat-tattagacacttgagttgatacattttgttagaaaaagtacaaatacattagtgtcatcataaatttttgaatagttggcgcat |
15804948 |
T |
|
| Q |
310 |
aatatgctattaga |
323 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15804949 |
gatatgctattaga |
15804962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 10 - 323
Target Start/End: Original strand, 15799036 - 15799347
Alignment:
| Q |
10 |
gtgggttttggaaggtctactgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaaccaa |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||||||| || | |||||||| |
|
|
| T |
15799036 |
gtgggtttcggaaggtctactgtgtcactccctagcatgcgaacaacggtggacatcgttggtcgatctgctgcatcttcttgtacacaaagtaaaccaa |
15799135 |
T |
|
| Q |
110 |
tgtgaataaacttcatgacttcactctcaacatacgnnnnnnngtggaatggatcgattaattctaaactttttccttcacaccagagtttccaagtctg |
209 |
Q |
| |
|
|||| ||| |||||| ||||||||| |||| || | ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |
|
|
| T |
15799136 |
tgtgtatacacttcaagacttcactttcaatgtatgttttttggtggaatggatcgattaattccaaacatttcccttcacaccagagtttccaagtctg |
15799235 |
T |
|
| Q |
210 |
caaacgaatatggatatattagaaacttgagttgaaacattttgtcagataatgtaaaaatacattagtgtgttcatagcattttggatagttggctcat |
309 |
Q |
| |
|
|| || ||||||||||| ||||| |||||||||| || ||||||| ||| ||| |||||||| ||||||| ||||| | |||| ||||||| | |||| |
|
|
| T |
15799236 |
catacaaatatggatat-ttagacacttgagttg-aatattttgttagaaaatttaaaaatatattagtgctatcataacttttttgatagttaggtcat |
15799333 |
T |
|
| Q |
310 |
aatatgctattaga |
323 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
15799334 |
actatgctattaga |
15799347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 15763619 - 15763935
Alignment:
| Q |
11 |
tgggttttggaaggtctactgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaaccaat |
110 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||||| ||||| || |||| || ||||| | ||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
15763619 |
tgggttgtggaagagctactgtatcactccctagcatacgaacgacagtggaaatggttggtcgatctgctgcatcttcttgtacacacaataaaccaat |
15763718 |
T |
|
| Q |
111 |
gtgaataaacttcatgacttcactctcaacatacgnnnnnnngtggaatggatcgattaattctaaactttttccttcacaccagagtttccaagtctgc |
210 |
Q |
| |
|
||| ||| |||||| ||||||||| |||| |||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
15763719 |
gtgtatacacttcaagacttcactttcaatgtacgtcttttggtgaaatggatcgattaattctatactttttccttcacaccaaagtttccaagtctgc |
15763818 |
T |
|
| Q |
211 |
aaacgaatatggatatattagaaacttgagttgaaacattttgtcagataatgtaaaaatacattagtgtgttcatagcattttggatagttggctcata |
310 |
Q |
| |
|
| || ||||||||||| ||||| ||||||||||||||||| ||| | | ||||| ||| || ||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
15763819 |
acacaaatatggatat-ttagacacttgagttgaaacattatgttaaaaaatgttaaagtaaattagtgccatcatagctttttgaatagttggctcatg |
15763917 |
T |
|
| Q |
311 |
atatgctattagagccct |
328 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
15763918 |
atatgctattagacccct |
15763935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 502 - 930
Target Start/End: Original strand, 15711703 - 15712136
Alignment:
| Q |
502 |
aaaacttacatataatagaagactttgcatatgttctgaaagaaagaagtctccatttctttttccataaattatctctaacacaataactccaaagctg |
601 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||||| | || |||||||||||| |
|
|
| T |
15711703 |
aaaacttacatataagagaagtgtttgcctatgttctgaaagaaagaattctccatttctttttccataaactatttctaatataagaactccaaagcta |
15711802 |
T |
|
| Q |
602 |
aaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccacaatataaaatcaacagaacaatgtcagttgtgtatcatg |
701 |
Q |
| |
|
|| ||||| || |||||||| |||||||||||||| || |||||||||||||||||||| | || ||||||||| |||||| ||||||||||| || || |
|
|
| T |
15711803 |
aatacatcagacttcactgaaaataacccagccatagcatattctggagccatgtatccgctatttaaaatcaatagaacactgtcagttgtgaataata |
15711902 |
T |
|
| Q |
702 |
taaatttttc--taacatatttgtttt----aaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttt |
795 |
Q |
| |
|
| || ||||| | || | ||| | | | ||||||| || || || | |||||||| || || ||||||||||| | ||| |||| ||| ||||| |
|
|
| T |
15711903 |
tgaagttttctgttacttttttcatatataaagaagagttgtcgatgacacttactaggttcccatgactctttttgtttctgtctgactttggcctttt |
15712002 |
T |
|
| Q |
796 |
tcaaatgtccttgctaatccaaa-tcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagtg |
894 |
Q |
| |
|
||||| | ||||| |||||||| || ||||||||||||||||||||||| |||| ||| |||||||| ||||||| |||||| ||||| ||||||||| |
|
|
| T |
15712003 |
tcaaaccttcttgccaatccaaagtctgatatttttggattcatttcatcgtccaaaagtacattgcttgctttcatatctctatggataactctaagtc |
15712102 |
T |
|
| Q |
895 |
gaagaatcctcatggaaggtatagaagtcctcttgc |
930 |
Q |
| |
|
| ||||||||| | |||| |||| ||||||||||| |
|
|
| T |
15712103 |
g-agaatcctcgt-gaagatataacagtcctcttgc |
15712136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 590 - 926
Target Start/End: Original strand, 15703509 - 15703843
Alignment:
| Q |
590 |
actccaaagctgaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccacaatataaaatcaacagaacaatgtcag |
689 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||| |||||||| || |||||||||||||||||||| | | |||||| ||||| || ||| || |
|
|
| T |
15703509 |
actccaaagctaaaaacatcagatttcactgaaaataatccagccatagcatattctggagccatgtatccgctgtttaaaatgcacagatcactgttag |
15703608 |
T |
|
| Q |
690 |
ttgtgtatcatgtaaatttttctaacatatttgtttt-aaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacgttg |
788 |
Q |
| |
|
||| | || ||||||| ||||||| ||||||||||| ||||||||| |||||||| | | |||||| || |||||||||||||| | ||| |||| ||| |
|
|
| T |
15703609 |
ttgcgaataatgtaaaattttcta--atatttgttttaaaaagagttgtcaataacacttgctaggttcccataactctttttgtttctgtctgactttg |
15703706 |
T |
|
| Q |
789 |
atctttttcaaatgtccttgctaatcc-aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattact |
887 |
Q |
| |
|
|||| |||||| | ||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| |||| ||||| || ||||| ||||| ||| |
|
|
| T |
15703707 |
gcctttctcaaattttcttgccaatccaaaatctgatatttttggattcatttcatcatctagaagaacgttgcaggctttaaggtctctatggataact |
15703806 |
T |
|
| Q |
888 |
ctaagtggaagaatcctcatggaaggtatagaagtcctc |
926 |
Q |
| |
|
|||||| | |||||||| | ||||||||| |||||||| |
|
|
| T |
15703807 |
ctaagtcg-agaatcctggt-gaaggtataaaagtcctc |
15703843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 489 - 933
Target Start/End: Original strand, 15722240 - 15722681
Alignment:
| Q |
489 |
agatgtgataaggaaaacttacatataatagaagactttgcatatgttctgaaagaaagaagtctccatttctttttccataaattatctctaacacaat |
588 |
Q |
| |
|
|||| |||| || |||||| |||| |||||||||||||||| |||| || || |||||||| || |||||||||||||||||||| || ||||| | || |
|
|
| T |
15722240 |
agatatgatcagcaaaactcacatgtaatagaagactttgcctatggtcggagagaaagaattcaccatttctttttccataaatgatttctaatataag |
15722339 |
T |
|
| Q |
589 |
aactccaaagctgaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccacaatataaaatcaacagaacaatgtca |
688 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| || | ||| |||| || |||||||||||||||||||| | | ||||||||| || ||||| | |
|
|
| T |
15722340 |
aactccaaagctataaacatcggatttaactgaaaacactccaaccatagcatattctggagccatgtatccgctgtttaaaatcaatag---aatgtta |
15722436 |
T |
|
| Q |
689 |
gttgt-gtatcatgtaaatttttctaacatatttgttt--taaaagagttttcaataacccgtactaggtgccaataactctttttgtctttgtatgacg |
785 |
Q |
| |
|
||||| || ||| | ||||||| ||||||| || |||||| || |||||| | |||||||| |||| |||||||||||| ||||| | | |
|
|
| T |
15722437 |
gttgtaagattatggggaattttcta--atatttgattcagaaaagaattgccaataatacttactaggtaccaacaactctttttgtttttgtctcaat |
15722534 |
T |
|
| Q |
786 |
ttgatctttttcaaatgtccttgctaatcc-aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggatt |
884 |
Q |
| |
|
| | | |||||||| | ||||| || || ||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
15722535 |
tcgtccgctttcaaattttcttgccaaaccaaaatctgatatttttggattcatttcactgtccagaagaacgttgctggctttcagatctcgatggatg |
15722634 |
T |
|
| Q |
885 |
actctaagtggaagaatcctcatggaaggtatagaagtcctcttgcgat |
933 |
Q |
| |
|
||||||||| | ||| ||||||| | |||||| | |||||||||||||| |
|
|
| T |
15722635 |
actctaagtcg-agagtcctcat-gcaggtattgtagtcctcttgcgat |
15722681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 15721773 - 15722036
Alignment:
| Q |
11 |
tgggttttggaaggtctactgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaaccaat |
110 |
Q |
| |
|
|||| ||||||||| || ||||||||| ||||||||| ||||||| ||||||| ||||| | ||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
15721773 |
tgggatttggaagggttattgtgtcactacctagcatgacaacaacggtggacattgttggtcgatctgctgcatcttcttgtacacacaataaacctat |
15721872 |
T |
|
| Q |
111 |
gtgaataaacttcatgacttcactctcaacatacgnnnnnnngtggaatggatcgattaattctaaactttttccttcacaccagagtttccaagtctgc |
210 |
Q |
| |
|
||| || | ||||| |||||||| |||| || | ||||| ||||| |||| ||| || | ||||||||||||||| ||| |||| |||||| |
|
|
| T |
15721873 |
gtgtatgcatttcattacttcactttcaatgtatgattctttgtggattggatggattttttccaagcattttccttcacaccaaagtctccatgtctgc |
15721972 |
T |
|
| Q |
211 |
aaacgaatatggatatattagaaacttgagttgaaacattttgtcagataatgtaaaaatacatt |
275 |
Q |
| |
|
| || | |||| |||| ||||| |||||| ||| |||||||||||||| ||| ||||||| |||| |
|
|
| T |
15721973 |
atacaattatgaatat-ttagacacttgaattggaacattttgtcagaaaatctaaaaatccatt |
15722036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 15696499 - 15696690
Alignment:
| Q |
30 |
tgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaaccaatgtgaataaacttcatgact |
129 |
Q |
| |
|
||||||||| |||||||| ||| || ||||||| ||||| | |||||| || |||| |||||| ||||||||||||||||| || ||||||| || |
|
|
| T |
15696499 |
tgtgtcactgcctagcatagcaacgaccgtggacatggttggtcgatctgcagcatcttgttgtacacacaataaaccaatgtgtatgcacttcataacc |
15696598 |
T |
|
| Q |
130 |
tcactctcaacatacgnnnnnnngtggaatggatcgattaattctaaactttttccttcacaccagagtttccaagtctgcaaacgaatatg |
221 |
Q |
| |
|
||||| |||| || | ||||| |||||| |||||||| || ||||||||||||||||| || ||||||||||||| || |||||| |
|
|
| T |
15696599 |
tcactttcaatgtatgattttttgtggattggatctattaattccaagctttttccttcacaccaaagcttccaagtctgcatacaaatatg |
15696690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 15703099 - 15703182
Alignment:
| Q |
30 |
tgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaaccaatgtg |
113 |
Q |
| |
|
||||||||| ||||||||| |||| ||| ||||||| ||||| | ||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
15703099 |
tgtgtcacttcctagcatgagaacgacggtggacatggttggtcgatctgctgcatcttcttgtatgcacaataaaccattgtg |
15703182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 796 - 889
Target Start/End: Original strand, 15692659 - 15692753
Alignment:
| Q |
796 |
tcaaatgtccttgctaatccaaa-tcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctctgtggattactct |
889 |
Q |
| |
|
||||||| |||||| |||||||| || |||||||| ||||||||||||| ||| | ||||||||||| ||||| |||||||| || |||||||| |
|
|
| T |
15692659 |
tcaaatgcccttgccaatccaaaatctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaattactct |
15692753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 15710695 - 15710816
Alignment:
| Q |
13 |
ggttttggaaggtctactgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaaccaatgt |
112 |
Q |
| |
|
|||||||||||| | | |||||| || ||||||||| |||||| | ||||||| ||||| | |||||| |||||||| || || ||||||||||| |||| |
|
|
| T |
15710695 |
ggttttggaaggaccattgtgtcgctgcctagcatgagaacaatggtggacatggttggtcgatctgcagcgtcttcctgcacacacaataaaccgatgt |
15710794 |
T |
|
| Q |
113 |
gaataaacttcatgacttcact |
134 |
Q |
| |
|
| | ||||||| |||||||| |
|
|
| T |
15710795 |
gtacgcacttcataacttcact |
15710816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 662
Target Start/End: Original strand, 15692450 - 15692522
Alignment:
| Q |
590 |
actccaaagctgaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccac |
662 |
Q |
| |
|
|||||||||||||| ||||||| |||||| || |||| || |||| ||||||||||| ||||||||||||| |
|
|
| T |
15692450 |
actccaaagctgaatacatcggttttcacagaaaatactccttccattgcgtattctggtgccatgtatccac |
15692522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 15703222 - 15703280
Alignment:
| Q |
153 |
gtggaatggatcgattaattctaaactttttccttcacaccagagtttccaagtctgca |
211 |
Q |
| |
|
||||| |||||| |||| ||| |||||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
15703222 |
gtggattggatctattatttccaaactttttctttcgcaccaaagtttccaagtctgca |
15703280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 739 - 893
Target Start/End: Original strand, 4547947 - 4548102
Alignment:
| Q |
739 |
aataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaa-tcagatatttttggattca |
837 |
Q |
| |
|
|||||| | ||||| ||||| |||| |||| |||| ||| |||| |||| |||||||||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4547947 |
aataacacatactatgtgcccataattcttcttgtgttttcttgactttgacctttttcaaatgcccttgccaatccaaaatcagatatttttggattca |
4548046 |
T |
|
| Q |
838 |
tttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagt |
893 |
Q |
| |
|
| || | ||| | ||||||||| || ||||| || ||||| ||||||||||||||| |
|
|
| T |
4548047 |
tctcttgatctaaaagaacattacttgcttttaggtctctatggattactctaagt |
4548102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 738 - 893
Target Start/End: Complemental strand, 3080585 - 3080429
Alignment:
| Q |
738 |
caataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaa-tcagatatttttggattc |
836 |
Q |
| |
|
||||||| | ||||| ||||| | ||||||| |||| ||| |||| ||| ||||||||||||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
3080585 |
caataacacatactatgtgccgacaactcttcttgtgttttcttgacattggtctttttcaaatgcccttgccaatccaaaatcagatatttttggattc |
3080486 |
T |
|
| Q |
837 |
atttcatcatccagaagaacattgctcgctttcagatctctgtggattactctaagt |
893 |
Q |
| |
|
|| || | ||| | |||||||| || ||||| || ||||| ||||||||||||||| |
|
|
| T |
3080485 |
atctcttgatctaatagaacattacttgcttttaggtctctatggattactctaagt |
3080429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 738 - 889
Target Start/End: Complemental strand, 3095022 - 3094870
Alignment:
| Q |
738 |
caataacccgtactaggtgccaataactctttttgtctttgtatgacgttgatctttttcaaatgtccttgctaatccaaa-tcagatatttttggattc |
836 |
Q |
| |
|
||||||| | ||||| ||||| | ||||||| |||| ||| |||| ||| ||||||||||||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
3095022 |
caataacacatactatgtgccgacaactcttcttgtgttttcttgacattggtctttttcaaatgcccttgccaatccaaaatcagatatttttggattc |
3094923 |
T |
|
| Q |
837 |
atttcatcatccagaagaacattgctcgctttcagatctctgtggattactct |
889 |
Q |
| |
|
|| || | ||| | |||||||| || ||||| || ||||| ||||||||||| |
|
|
| T |
3094922 |
atctcttgatctaagagaacattacttgcttttaggtctctatggattactct |
3094870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 502 - 662
Target Start/End: Original strand, 4547688 - 4547848
Alignment:
| Q |
502 |
aaaacttacatataatagaagactttgcatatgttctgaaagaaagaagtctccatttctttttccataaattatctctaacacaataactccaaagctg |
601 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| ||| |||| | ||||| |||||||| ||||||| ||||| | || ||||||| | ||| |
|
|
| T |
4547688 |
aaaacttacatatataagaagactttgaccatgttcttcgagatagaatccaccattcttttttccacaaattatttctaataaaagaactccataactg |
4547787 |
T |
|
| Q |
602 |
aaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccac |
662 |
Q |
| |
|
|||||||| | ||||||||| ||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
4547788 |
aaaacatctgttttcactgaatataacccttccatagcgtattctggagccatgtaaccac |
4547848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 570 - 662
Target Start/End: Complemental strand, 3080762 - 3080670
Alignment:
| Q |
570 |
aaattatctctaacacaataactccaaagctgaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccac |
662 |
Q |
| |
|
||||||| ||||| | || ||||||||||||||||||||| |||||||| || ||||||| |||| ||||| ||||| ||||||||||||| |
|
|
| T |
3080762 |
aaattatttctaataaaagaactccaaagctgaaaacatcagatttcacagaatataacccttccatagcgtactctggtgccatgtatccac |
3080670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 570 - 662
Target Start/End: Complemental strand, 3095199 - 3095107
Alignment:
| Q |
570 |
aaattatctctaacacaataactccaaagctgaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccac |
662 |
Q |
| |
|
||||||| ||||| | || ||||||||||||||||||||| |||||||| || ||||||| |||| ||||| ||||| ||||||||||||| |
|
|
| T |
3095199 |
aaattatttctaataaaagaactccaaagctgaaaacatcagatttcacagaatataacccttccatagcgtactctggtgccatgtatccac |
3095107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 662
Target Start/End: Complemental strand, 3123099 - 3123012
Alignment:
| Q |
575 |
atctctaacacaataactccaaagctgaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccac |
662 |
Q |
| |
|
||||||| || || ||| ||||||||||||||||| || |||||||| || || || | || || |||||||||||||||||||||| |
|
|
| T |
3123099 |
atctctagcaaaagaacgccaaagctgaaaacatctgacttcactgaaaacaagccttcgatagcatattctggagccatgtatccac |
3123012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 4547173 - 4547275
Alignment:
| Q |
30 |
tgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaaccaatgtgaataaacttcatgact |
129 |
Q |
| |
|
||||||||| | |||||| |||||| ||||||| ||||| ||||| |||| ||||||||||| ||||| |||||||| || ||| ||||||| ||| |
|
|
| T |
4547173 |
tgtgtcacttgccagcatgacaacaacattggacatggttggtctatccactgcatcttcttgtacacacaacaaaccaatatgtatacacttcataact |
4547272 |
T |
|
| Q |
130 |
tca |
132 |
Q |
| |
|
||| |
|
|
| T |
4547273 |
tca |
4547275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 819 - 877
Target Start/End: Original strand, 2662494 - 2662552
Alignment:
| Q |
819 |
tcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct |
877 |
Q |
| |
|
||||| ||||||||||||||||| |||| | |||||||||||| ||||| |||||||| |
|
|
| T |
2662494 |
tcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctct |
2662552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 624
Target Start/End: Original strand, 2681803 - 2681852
Alignment:
| Q |
575 |
atctctaacacaataactccaaagctgaaaacatcggatttcactgagaa |
624 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
2681803 |
atctctagcacaagaactccaaagctaaaaacatctgatttaactgagaa |
2681852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 662
Target Start/End: Original strand, 2704312 - 2704381
Alignment:
| Q |
593 |
ccaaagctgaaaacatcggatttcactgagaataacccagccatcgcgtattctggagccatgtatccac |
662 |
Q |
| |
|
|||||||| |||||||| |||||| |||| || ||||| |||| ||||||||||||| ||| ||||||| |
|
|
| T |
2704312 |
ccaaagctaaaaacatctgatttctctgaaaacaacccctccattgcgtattctggagacatatatccac |
2704381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 816 - 877
Target Start/End: Complemental strand, 36370616 - 36370555
Alignment:
| Q |
816 |
aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct |
877 |
Q |
| |
|
||||| || ||||| |||||||||||| |||| || ||||||||||| ||||| |||||||| |
|
|
| T |
36370616 |
aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct |
36370555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 816 - 877
Target Start/End: Complemental strand, 36399821 - 36399760
Alignment:
| Q |
816 |
aaatcagatatttttggattcatttcatcatccagaagaacattgctcgctttcagatctct |
877 |
Q |
| |
|
||||| || ||||| |||||||||||| |||| || ||||||||||| ||||| |||||||| |
|
|
| T |
36399821 |
aaatctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct |
36399760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University