View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5448-Insertion-5 (Length: 855)

Name: NF5448-Insertion-5
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5448-Insertion-5
NF5448-Insertion-5
[»] chr5 (14 HSPs)
chr5 (7-855)||(11859071-11859931)
chr5 (8-322)||(11827481-11827795)
chr5 (392-849)||(12037875-12038317)
chr5 (351-614)||(11827171-11827434)
chr5 (93-215)||(12038482-12038604)
chr5 (30-184)||(11902616-11902770)
chr5 (721-813)||(11826945-11827037)
chr5 (99-178)||(11731429-11731508)
chr5 (692-790)||(11903281-11903379)
chr5 (94-188)||(11974974-11975068)
chr5 (721-790)||(11730826-11730895)
chr5 (256-333)||(11902866-11902943)
chr5 (33-85)||(12038627-12038679)
chr5 (721-790)||(11730382-11730451)


Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 7 - 855
Target Start/End: Complemental strand, 11859931 - 11859071
Alignment:
Q  7 agtcactttcttttttcgctttatggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagc 106  Q
    |||||||||||| || ||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  11859931 agtcactttcttcttccgcttgatggaaaaccaaaggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagc 11859832  T
Q  107 agtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaaaattgtcg 206  Q
     |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||    
T  11859831 cgtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcgaagcataacttctgataagtgggaaggttgtcg 11859732  T
Q  207 taatagataaacttaagcatttccattgcttctggaatccagttgtcaccac------caccaccactttgcttcatcatcaacgtcgctacgatcacaa 300  Q
    |||||||||||||||||| |||| | |||||  |||||||||||||||||||      ||||||||||||||||| |||| | | |||||||||||||||    
T  11859731 taatagataaacttaagcgtttctaatgctttcggaatccagttgtcaccacgaccaccaccaccactttgcttcttcattaccatcgctacgatcacaa 11859632  T
Q  301 tcaaaagaggaactccaccacaaccctccacgatctcccgttcatgttca------ggttcaatggtgctttgttcttttttggctgaagtaattggtcc 394  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||| |||||      |||||| ||||||||||  ||||||||| |||||||||||||||    
T  11859631 tcaaaagaggaactccagcacaaccttccacaatctcccgttcaggttcacgttcgggttcagtggtgctttgcacttttttggttgaagtaattggtcc 11859532  T
Q  395 atgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgcttcgt 494  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||| |||||| |||||| | ||||||||||||| ||||||||    
T  11859531 atgaatctgctgaaacaatgaccaagattcctcttgattaagcccctgcaacttcaaaacatgtctagcagcaattttgttggcaacatggctgcttcgt 11859432  T
Q  495 gttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattcttaatctcaattcgca 594  Q
    |||||||||||||||||  |||||||||||||||| || ||||||| |  |||||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  11859431 gttgttgtaacaagtatgacggtatcagtccttccacctgcagcctgcgctaatttcttctgcaacttctcgagatcaccattctcaatctcaattcgca 11859332  T
Q  595 aatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtgatgagggccattgat 694  Q
    ||||||||||||||||||||| |||||||| |||| || || |||||||||| | |||||||||||||||||||||||||||||||||| | ||||||||    
T  11859331 aatcatctataacaagtaagacgcgtttcttatgaacataccgatcagtaacgctttttactatggattcaacatcaaattggtgatgaagaccattgat 11859232  T
Q  695 ccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagca 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11859231 ccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagca 11859132  T
Q  795 attacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctcct 855  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11859131 attacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctcct 11859071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 11827795 - 11827481
Alignment:
Q  8 gtcactttcttttttcgctttatggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagca 107  Q
    ||||||||||| || ||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||    
T  11827795 gtcactttcttcttccgcttgatggaaaaccaaaggaacaaagtcttcgaaacaagcatgaccaaattgttgttctggattgataagaaacccttcacca 11827696  T
Q  108 gtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaaaattgtcgt 207  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  11827695 gtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataatttctgataagtgggaagatcgtcgt 11827596  T
Q  208 aatagataaacttaagcatttccattgcttctggaatccagttgtcaccaccaccaccactttgcttcatcatcaacgtcgctacgatcacaatcaaaag 307  Q
    ||||||||| ||| | | |||| | ||||||  ||||||| |  ||||||||| ||||||| |||||| |||||| | | || |||||||| ||||||||    
T  11827595 aatagataagcttcaccttttctagtgcttcccgaatccattcttcaccaccaacaccactatgcttcgtcatcacctttgcaacgatcactatcaaaag 11827496  T
Q  308 aggaactccaccaca 322  Q
     || || ||||||||    
T  11827495 ggggaccccaccaca 11827481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 392 - 849
Target Start/End: Complemental strand, 12038317 - 12037875
Alignment:
Q  392 tccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgctt 491  Q
    ||||||||| | || |||||| |||||||| ||||| ||||||||| ||| ||| ||||||||| ||| || |||||||| || ||| |||||||| ||     
T  12038317 tccatgaatttcctcaaacaaggaccaagaatcctcttgattaagcccctgcaacttcaaaacatgtccagcagcaatgttgtcggcgacatggttacta 12038218  T
Q  492 cgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattct---taatctcaa 588  Q
    ||||| ||   ||  ||||| || |||||||  |  || ||| |||| ||  |||||||||||||||||||||  |||| ||||  ||   |||||||||    
T  12038217 cgtgtagt---aatgagtatggccgtatcagcacggccaccaacagcttcagttaatttcttctgcaacttctcaagataatcaggctcattaatctcaa 12038121  T
Q  589 ttcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtgatgagggcc 688  Q
     || ||||||||||||||||||||||| |||||||||||||| |||||   | | ||||| |||| |||| ||||||||||||||  |||              
T  12038120 atctcaaatcatctataacaagtaagaggcgtttctcatgatgagact---cggcaacactttttgctatagattcaacatcaaa--ggtt--------- 12038035  T
Q  689 attgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaaca 788  Q
     ||||||||||||| ||| || ||| || ||  || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12038034 -ttgatccaaattggttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaaca 12037936  T
Q  789 atagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataa 849  Q
    ||| |||| |||| ||||||||||| ||||   || ||||  |||| ||||||||||||||    
T  12037935 ataacaataacaacaggaacagcagcatcagtgttcttcaggttcaccagtttatctataa 12037875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 351 - 614
Target Start/End: Complemental strand, 11827434 - 11827171
Alignment:
Q  351 ggttcaatggtgctttgttcttttttggctgaagtaattggtccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttca 450  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||| ||| ||| ||||    
T  11827434 ggttcgatggtgctttgtgcttttttggttgaagtaattggtccataaatctgctgaaacaatgaccaagattccttttgattaagcccctgcaacttca 11827335  T
Q  451 aaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaattt 550  Q
    |||||  | ||| | |||| | |||||| ||||||||||| |    ||| ||||  |||||| ||||||  || |  || |||||| ||||||| |||||    
T  11827334 aaacatatgtagcaccaatattgttggcgacatggttgctac---atgtggtaatgagtatcacggtattggtacggccaccagcaacctccatcaattt 11827238  T
Q  551 cttctgcaacttcttgagatcatca---ttcttaatctcaattcgcaaatcatctataacaagtaag 614  Q
    |||||| ||||||| ||| ||||||   || |||||| |||||| |||||||||||||| |||||||    
T  11827237 cttctgtaacttctcgaggtcatcatgcttattaatcgcaattctcaaatcatctataataagtaag 11827171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 12038604 - 12038482
Alignment:
Q  93 agaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataag 192  Q
    ||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  12038604 agaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacg 12038505  T
Q  193 tgggaaaattgtcgtaatagata 215  Q
    |||||| ||  ||||||||||||    
T  12038504 tgggaagatcttcgtaatagata 12038482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 11902616 - 11902770
Alignment:
Q  30 tggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctct 129  Q
    ||||||||||  ||||| ||||| | |||||||| | ||| ||||||||||| |||  ||   ||||| ||||||||||||||||||| |||||||||||    
T  11902616 tggaaaaccaacggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctct 11902715  T
Q  130 ctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataactt 184  Q
    | ||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  11902716 cagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt 11902770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 721 - 813
Target Start/End: Complemental strand, 11827037 - 11826945
Alignment:
Q  721 ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagcag 813  Q
    ||||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | || |||||||||||    
T  11827037 ctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaatagcaataaaaacaggaacagcag 11826945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 11731508 - 11731429
Alignment:
Q  99 ccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagca 178  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||    
T  11731508 ccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagca 11731429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 692 - 790
Target Start/End: Original strand, 11903281 - 11903379
Alignment:
Q  692 gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat 790  Q
    ||||||||||| || ||||||| ||    |||||||||| |||||||| ||||| ||||  |||||||||||||| |||||||||||||||||||||||    
T  11903281 gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat 11903379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 11974974 - 11975068
Alignment:
Q  94 gaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctga 188  Q
    |||| ||||| || ||| |||| ||||||||||||||  |||||||||||| |||||  ||||||||||||||| || |||| || |||||||||    
T  11974974 gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaacttctga 11975068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 721 - 790
Target Start/End: Complemental strand, 11730895 - 11730826
Alignment:
Q  721 ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat 790  Q
    |||||||||||||||| || ||||| || || ||||||||||| || || ||||| ||||||||||||||    
T  11730895 ctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaat 11730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 11902866 - 11902943
Alignment:
Q  256 caccaccaccactttgcttcatcatcaacgtcgctacgatcacaatcaaaagaggaactccaccacaaccctccacga 333  Q
    |||||||| ||||||| ||| |||||||| | |||||| ||||||||  |||||| |||||||||||| ||| |||||    
T  11902866 caccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactccaccacaatccttcacga 11902943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 12038679 - 12038627
Alignment:
Q  33 aaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgg 85  Q
    ||||||| |||||| ||||| | |||||||||| |||||||||||||||||||    
T  12038679 aaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctgg 12038627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 790
Target Start/End: Complemental strand, 11730451 - 11730382
Alignment:
Q  721 ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat 790  Q
    |||||||||||||||| |  ||||| ||||| ||||||||||| || || ||||| | ||||||||||||    
T  11730451 ctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaat 11730382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University