View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448-Insertion-9 (Length: 624)
Name: NF5448-Insertion-9
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448-Insertion-9 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 624
Target Start/End: Original strand, 443469 - 444080
Alignment:
| Q |
8 |
cttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgt |
105 |
Q |
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| T |
443469 |
cttgtgactctgtgggagctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgt |
443568 |
T |
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| Q |
106 |
ttggttacatgcatgttttaaaatcttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaagacagaagctttatcttt |
205 |
Q |
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| T |
443569 |
ttggttacatgcatgttttaaaatcttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaagacagaagctttatcttt |
443668 |
T |
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| Q |
206 |
tctacttgagaacaagaagcagattatagaaattgatgattcagacagtgatgatgaaccaacagagtcacctcaggctatcatccttgataaggtgaga |
305 |
Q |
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| T |
443669 |
tctacttgagaacaagaagcagattatagaaattgatgattcagacagtgatgatgaaccaacagagtcacctcaggctatcatccttgataaggtgaga |
443768 |
T |
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| Q |
306 |
ttgaataataaagctttgcatgaaagtcnnnnnnnnnnnnnnnnnatttagacagtgatagcttcattcttggcatgcagtcggagaaactaagctcaac |
405 |
Q |
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| T |
443769 |
ttgaataataaagctttgcatgaaagtc--------tttttttttatttagacagtgatagcttcattcttggcatgcagtcggagaaactaagctcaac |
443860 |
T |
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| Q |
406 |
caatttcatgtcatgcg-cggcaaactaccggtggcggaggctttgggtgggaggtcggagaagctaaaccttcaaacactccaatccaaagttgaacgc |
504 |
Q |
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| T |
443861 |
caatttcatgtcatgcgacggcaaactaatggtggcggaggctttgggtgggaggtcggagaagctaaaccttcaaacactccaatccaaagttgaacgc |
443960 |
T |
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| Q |
505 |
ggcccaaaaggctacatattggaggttcttcttattcactctcaattcaattcctccctccaactatttcaacaagcggccacgaacttcatttccacca |
604 |
Q |
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| T |
443961 |
gacccaataggctacatattggaggttctccttattcactctcaattcaattcctccctccaactatttcaacaagcggccatgaacttcatttccgtca |
444060 |
T |
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| Q |
605 |
acggaatcatcgattctgac |
624 |
Q |
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| T |
444061 |
acggaatcatcgattctgac |
444080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 465452 - 465379
Alignment:
| Q |
8 |
cttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
79 |
Q |
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||||||| ||||||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
465452 |
cttgtgattctgtggaagctttacaagagggaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
465379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 444684 - 444754
Alignment:
| Q |
8 |
cttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
76 |
Q |
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||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
444684 |
cttgtgattctgtggcggctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgctatttgcac |
444754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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