View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5448_high_12 (Length: 354)
Name: NF5448_high_12
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 25948248 - 25947915
Alignment:
| Q |
1 |
aaaactgaaaggaaggaacaatatttgaaatttaaataaatacgacacaagccatttgcaccagttacttcctgtgaaagtaactatctgaattgcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25948248 |
aaaactgaaaggaaggaacaatatttgaaatttaaataaatacgacacaagccatttgcaccagttacttcctctgaaagtaactatctgaattgcaaca |
25948149 |
T |
|
| Q |
101 |
acatgttggtttccaaagtatattaattacaccagcagaatatactgnnnnnnnttaacaagaatatggaaggccagtcacaagtttttattgcttcacg |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25948148 |
acatgttggtttccaaagtatattcattacaccagcagaatatactgaaaaaaat-aacaagaatatggaaggccagtcacaagtttttattacttcacg |
25948050 |
T |
|
| Q |
201 |
cgcaaggtaagagaaaataccttgtctggtgtggatgcacctgatgttacaccaatcttcaatggaccctttggcagccagttttctttctcgacaagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25948049 |
cgcaaggtaagagaaaataccttgtctggtgtggatgcacctgatgttacaccaatcttcaatggaccctttggcagccagttttctttctcgacaagct |
25947950 |
T |
|
| Q |
301 |
cgccatgctgaaagatgaaaagataaagcattatt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
25947949 |
cgccatgctgaaagatgaaaagataaagcattatt |
25947915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 184 - 335
Target Start/End: Complemental strand, 25926367 - 25926216
Alignment:
| Q |
184 |
gtttttattgcttcacgcgcaaggtaagagaaaataccttgtctggtgtggatgcacctgatgttacaccaatcttcaatggaccctttggcagccagtt |
283 |
Q |
| |
|
|||||||| | ||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||| || |||| |
|
|
| T |
25926367 |
gtttttatagattcacatgcaaggcaagagaaaataccttgtcaggtgtggatgcaccagatgttacaccaatccttaatggaccctttggtagaaagtt |
25926268 |
T |
|
| Q |
284 |
ttctttctcgacaagctcgccatgctgaaagatgaaaagataaagcattatt |
335 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25926267 |
ttctttctccacaagctcgccatgctgaaagatgaaaagataaaacattatt |
25926216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University