View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_high_13 (Length: 350)
Name: NF5448_high_13
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 34676493 - 34676175
Alignment:
| Q |
16 |
acttcttctgtcaccagtgcctttattttagtgaaaattaatcacttcaaatggttactacatgtttaacccactttggtaattaaaataaaataggaaa |
115 |
Q |
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| T |
34676493 |
acttcttctgtcaccagtgcctttattttagtgaaaattaatcacttcaaatggttactacatgtttaacccactttggtaattaaaata-----ggaaa |
34676399 |
T |
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| Q |
116 |
gttaatattcatatcattggcatttggcaacaaagggagagtaagtaattgtaaaactgtggtccacgaatatatataagaggtagcaaaattaaagtga |
215 |
Q |
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| T |
34676398 |
gttaatattcatatcattggcatttggcaacaaagggaaagtaag-aattgtaaaactgtggtccacgaatatatataag--gtagcaaaattaaagtga |
34676302 |
T |
|
| Q |
216 |
gaaataaaaaacaagataaggaatatatatagctagggtaagtaagatatataggaagactaacccgtagagttaggctttagaatcaagaaattaatta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676301 |
aaaataaaaaacaagataaggaatatatatagctagggtaagtaagatatatgggaagactaacccgtagagttaggctttagaatcaagaaattaatta |
34676202 |
T |
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| Q |
316 |
ttaaacgatatatatatgcttcatttc |
342 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34676201 |
ttaaacgatatatatatgcttcatttc |
34676175 |
T |
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