View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_high_17 (Length: 313)
Name: NF5448_high_17
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 8380777 - 8380472
Alignment:
| Q |
1 |
acattccacctacaaatca---tccccgtatgagatagcaatagtatatttaagctatgagcattgacattggacacgatacttactcgttgacattggg |
97 |
Q |
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| T |
8380777 |
acattcaacctacaaatcaatatccccgtatgagatagcaatagtatatttaagctatgagcattgacattggacacgatacttacttgtcgacattcgg |
8380678 |
T |
|
| Q |
98 |
aaattttttagaaaatgaattagatgaatgtaacaacctgtgttcgtgtcagtgtcgaacactggaccgaacacagtttccatcaaaagtattagtgcta |
197 |
Q |
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| T |
8380677 |
aaaatttttagaaaatgaattagatgaatgtaacaacctgtgttcgtgtcagtgtcgaacactggaccgaacacagtttccatcaaaagtattagtgcta |
8380578 |
T |
|
| Q |
198 |
cagattattcaagatccaagagcataacatatatatactttgtcttaagaggaatccaaaatttgaatgtatcatctagatagcataatgatattaacct |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8380577 |
cagattattcaagatccaagagcataacatatatatactttgtcttaagaggaatccaaaatttgaatgtatcatctagatagcataatgatattaaccc |
8380478 |
T |
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| Q |
298 |
tctttg |
303 |
Q |
| |
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|||||| |
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| T |
8380477 |
tctttg |
8380472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 8364989 - 8364686
Alignment:
| Q |
17 |
tcatccccgtatgagatagcaatagtatatttaagctatgagcattgacattggacacgatacttactcgttgacattgggaaatttttt-agaaaa-tg |
114 |
Q |
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|||||| ||| ||| |||||||||||| ||| ||||| |||||||||||||| ||||||| ||| |||||| ||||| ||||| |||||| |||||| || |
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| T |
8364989 |
tcatccacgtttgatatagcaatagtacattcaagctctgagcattgacattagacacgacactgactcgtcgacatcgggaattttttttagaaaaatg |
8364890 |
T |
|
| Q |
115 |
aattagatgaatgtaacaacctgtgttcgtgtcagtgtcgaacactggaccgaacacagtttccatcaaaa-------gtattagtgctacagattattc |
207 |
Q |
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||||| |||||| || ||| |||| | |||||||||||||||||||||| ||||| || | |||| || |||| ||| || | | ||||| |
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| T |
8364889 |
aattaactgaatgcaataacatgtgaccatgtcagtgtcgaacactggaccagacacacttacaatcagaactcagaagtatcggtgatagaaaatattc |
8364790 |
T |
|
| Q |
208 |
aagatcca------agagcata-acatatatatactttgtcttaagaggaatccaaaatttgaatgtatcatctagatagcataatga-tattaaccttc |
299 |
Q |
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|||||| | | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
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| T |
8364789 |
aagatctataaagcatagcatatatatatatatactttgtcttaagaggaatccaaaatttgaatgtatcatctagatagcatattgactgttaaccttc |
8364690 |
T |
|
| Q |
300 |
tttg |
303 |
Q |
| |
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|||| |
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|
| T |
8364689 |
tttg |
8364686 |
T |
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