View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_high_18 (Length: 297)
Name: NF5448_high_18
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 26428122 - 26428398
Alignment:
| Q |
17 |
agaaagtatatagaagaaatcttctagagaagaaatcttgtagatatgtgtgaatctttgcaaggttttagggtttgagagagaga--ttgaagggtnnn |
114 |
Q |
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| T |
26428122 |
agaaagtatatagaagaaatcttctagagaagaaatcttgtagatatgtgtgaatctttgcaaggttttagggtttgagagagagagattgaagggtaaa |
26428221 |
T |
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| Q |
115 |
nnnngactacgaatgactttattttgagagagaaatgagaaaaagaagtgtaaagtacagtgttgttgttgagagtacagctatgatataaaactgattt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26428222 |
aaaagactacgaatgactttattttgagagagaaatgagaaaaagaagtgtaaagtacagtgttgttgttgagagtacagctatgatataaaactgattt |
26428321 |
T |
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| Q |
215 |
catcttcactgcctcatagtagtttgtgggttgagaaaattaaggagaagtttgaggcagttacataatacctatgc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26428322 |
catcttcactgcctcatagtagtttgtgggttgagaaaattaaggagaagtttgaggcagttacataatacctatgc |
26428398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 69 - 217
Target Start/End: Complemental strand, 28008773 - 28008623
Alignment:
| Q |
69 |
aatctttgcaaggttttagggtttgagagagagattgaagggtnnnnnnngactacgaatgactttattttgagagagaaatgagaaaaagaagtgt-aa |
167 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| || |
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| T |
28008773 |
aatctttgctaggtttgagggtttgagagagagattgaaggggaaaaaaagactgcgtatgactttattttgagagagaaatgagaaaaagaagtgtaaa |
28008674 |
T |
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| Q |
168 |
agtacagtgttgttgttgagagtacagctatg--atataaaactgatttcat |
217 |
Q |
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|||| |||||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
28008673 |
agtagagtgttgttg-agagaatacagctatgatatataaaactgatttcat |
28008623 |
T |
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