View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_high_26 (Length: 255)
Name: NF5448_high_26
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_high_26 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 82 - 255
Target Start/End: Complemental strand, 19822648 - 19822475
Alignment:
| Q |
82 |
ccttaaacttaaataatcacagctccaccaaaaagctcatattgcttgaagaaagaagagaggggatttaccatcaacaaaagtcttaactttaccatca |
181 |
Q |
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| T |
19822648 |
ccttaaacttaaataatcacagctccaccaaaaagctcatattgcttgaagaaagaagagaggggatttaccatcaacaaaagtcttaactttaccatca |
19822549 |
T |
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| Q |
182 |
ttgttgcacaaaaacatatatttgatgtgctgaaataagttaaactaacacaactttactctaatgacaataat |
255 |
Q |
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| T |
19822548 |
ttgttgcacaaaaacatatatttgatgtgctgaaataagttaaactaacacaactttactctaatgacaataat |
19822475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 19823825 - 19823783
Alignment:
| Q |
18 |
aatacaagttcagaaaaggagagaaattgaacacgacgacaaa |
60 |
Q |
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| T |
19823825 |
aatagaagttcagaaaaggagagaaattgaacacgacgacaaa |
19823783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 23189902 - 23189935
Alignment:
| Q |
56 |
acaaaccctaaaccctaaaccctaaaccttaaac |
89 |
Q |
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| T |
23189902 |
acaaaccctaaaccctaaaccctaaaccctaaac |
23189935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 23611157 - 23611190
Alignment:
| Q |
56 |
acaaaccctaaaccctaaaccctaaaccttaaac |
89 |
Q |
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| T |
23611157 |
acaaaccctaaaccctaaaccctaaaccctaaac |
23611190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 102 - 138
Alignment:
| Q |
58 |
aaaccctaaaccctaaaccctaaaccttaaacttaaa |
94 |
Q |
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| T |
102 |
aaaccctaaaccctaaaccctaaaccctaaacctaaa |
138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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