View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_high_27 (Length: 255)
Name: NF5448_high_27
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 2681589 - 2681382
Alignment:
| Q |
18 |
tgagtttcattgatgcattatatatagtgtttcataggtagtgtatgataaccacgtgtccaacttcttgacacgtgcacaacatgtgtcgtgccatgga |
117 |
Q |
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| T |
2681589 |
tgagtttcattgatgcattatttatagtgtttcataggtagtgtatgataaccacgtgtccaacttcttgacacgtccacaacacgtgtcgttccatgga |
2681490 |
T |
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| Q |
118 |
tggttgtaaacttgaatgccatttataagtttaagataagaaaccagcctctagaattttgacaa----------gtttattatataacgatgctaagat |
207 |
Q |
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| T |
2681489 |
tggttgtaaacttgaatgccatttataagtttaagataataaaccagcctctagaattttgacaagttgccacttgtttattatataacgatgctaagat |
2681390 |
T |
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| Q |
208 |
atccatga |
215 |
Q |
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|||||||| |
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| T |
2681389 |
atccatga |
2681382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 2675274 - 2675105
Alignment:
| Q |
18 |
tgagtttcattg-atgcattatatatagtgtttcataggtagtgtatgataaccacgtgtccaacttcttgacacgtgcacaacatgtgtcgtgccatgg |
116 |
Q |
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||||||||||| ||||| ||| ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |
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| T |
2675274 |
tgagtttcatttcatgcactatttatagtgtttcatgagtcgtgtatgataaccacgtgtctaacttcttgacacgtgcacaacatgtgtcatcccatgg |
2675175 |
T |
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| Q |
117 |
atggttgtaaacttgaatgcca-tttataagtttaagataagaaaccagcctctagaattttgacaagtt |
185 |
Q |
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||||||||||||||| |||| | ||| |||||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
2675174 |
atggttgtaaacttgtatgcaattttctaagtttaagatgagaaaccaacctgtagaattttgacaagtt |
2675105 |
T |
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