View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_high_37 (Length: 236)
Name: NF5448_high_37
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 1080401 - 1080201
Alignment:
| Q |
22 |
aacatatattgtcaaaaggagatccacaaattagaccacttatagcgaaacttgaaatttgcatatattcattgtttatagtgtcttgaaatttagataa |
121 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1080401 |
aacatatattgtcaaaaggagatccgcaaattagaccacttatagcgaaacttgaaatttgcatatattcattgttcatagtgtcttgaaatttagataa |
1080302 |
T |
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| Q |
122 |
tgttactaaatcttattcaattataattttcatagatttgtgggccttcacatggtcatgaagcaattatgtttttactgatttgaatttgcttatataa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1080301 |
tgttactaaatcttattcaattataattttcatagatttgtgggccttcacatggtcatgaagcaattatgtttttactgatttgaatttgcttatataa |
1080202 |
T |
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| Q |
222 |
t |
222 |
Q |
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| |
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| T |
1080201 |
t |
1080201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 2836666 - 2836827
Alignment:
| Q |
22 |
aacatatattgtcaaaaggagatccacaaattagaccacttatagcgaaacttgaaatttgcatatattcattgtttatagtgtcttgaaatttagataa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2836666 |
aacatatattgtcaaaaggagatccacaaattagaccacttatagcgaaacttgaaatttgcatatattcattgttcatagtgtcttgaaatttagataa |
2836765 |
T |
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| Q |
122 |
tgttactaaatcttattcaattataattttcatagatttgtgggccttcacatggtcatgaa |
183 |
Q |
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| T |
2836766 |
tgttactaaatcttattcaattataattttcatagatttgtgggccttcacatggtcatgaa |
2836827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 2836857 - 2836893
Alignment:
| Q |
186 |
aattatgtttttactgatttgaatttgcttatataat |
222 |
Q |
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| T |
2836857 |
aattatgttattactgatttgaatttgcttatataat |
2836893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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