View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_high_38 (Length: 235)
Name: NF5448_high_38
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 47968114 - 47968337
Alignment:
| Q |
1 |
cccaatctatggtgtacatcctatacttcaaacgatggcggttgatagttctgtaaaattttgtggatgggttacggctcaaaggtcctaccnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47968114 |
cccaatctatggtgtacatcctatacttcaaacgaaggcggttgatagttctgtaaaattatgtggatgggttacggctcaaaggtcctacaaaaaaaag |
47968213 |
T |
|
| Q |
101 |
nnnca-----ccatgttagaaatattcacggaaaaacatgttgtacaaaagaaacgaaaatagggaaagcatcctaatgatgacaaatgttatatacctg |
195 |
Q |
| |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
47968214 |
aagcaaaacaccatgttagaaatattaacggaaaaacatgttgtacaaaagaaacgaaaatagggaaggcatcctaatgatgacagatgttatatacctg |
47968313 |
T |
|
| Q |
196 |
tgaggcaatggtaggagagcaatg |
219 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
47968314 |
tgaggcaatggtaggagagcaatg |
47968337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 37337968 - 37337748
Alignment:
| Q |
3 |
caatctatggtgtacatcctatacttcaaacgatggcggttgatagttctgtaaaattttgtggatgggttacggctcaaaggtcctaccnnnnnnnnnn |
102 |
Q |
| |
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||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
37337968 |
caatctatggtgtacgtcctatacttcaaacaaaggcagttgatagttctgtaaaattatgtggatgggttacggctcaatggtcctacaaaataaaaag |
37337869 |
T |
|
| Q |
103 |
nca----ccatgttagaaatattcacggaaaaacatgttgtacaaaagaaacgaaaatagggaaagcatcctaatgatgacaaatgttatatacctgtga |
198 |
Q |
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| T |
37337868 |
caaaaaaccatgttagaaatattcacggaaaaacatgttgtacaaaagaaacgaaaatagggaaagcattctaatgatgacagatgttatatacatgtga |
37337769 |
T |
|
| Q |
199 |
ggcaatggtaggagagcaatg |
219 |
Q |
| |
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||||||||||||||||||||| |
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| T |
37337768 |
ggcaatggtaggagagcaatg |
37337748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 11300204 - 11300424
Alignment:
| Q |
3 |
caatctatggtgtacatcctatacttcaaacgatggcggttgatagttctgtaaaattttgtggatgggttacggctcaaaggtcctaccnnnnnnnnnn |
102 |
Q |
| |
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||||||||||||||| |||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |
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| T |
11300204 |
caatctatggtgtacgtcctgtactacaaacgaaggcggttgatagttctgtaaaattctgtggatgggttacagctcaaaagtcctacaaaataaaaag |
11300303 |
T |
|
| Q |
103 |
n----caccatgttagaaatattcacggaaaaacatgttgtacaaaagaaacgaaaatagggaaagcatcctaatgatgacaaatgttatatacctgtga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |
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| T |
11300304 |
caaaacaccatgttagaaatattcacggaaaaacatgttgtacaaaagaaacgaaaatagggaaagcattctaatgatgacgtatgttatatacccgtga |
11300403 |
T |
|
| Q |
199 |
ggcaatggtaggagagcaatg |
219 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
11300404 |
ggcaatggtaggagagcaatg |
11300424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 15296798 - 15296574
Alignment:
| Q |
3 |
caatctatggtgtacatcctatacttcaaacgatggcggttgatagttctgtaaaattttgtggatgggttacgg--------ctcaaaggtcctaccnn |
94 |
Q |
| |
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||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |
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| T |
15296798 |
caatctatggtgtacgtcccatacttcaaacgaaggcggttgatagttctgtaaaattatgttgatgggttacgggcttacggctcaaaggtcctacaaa |
15296699 |
T |
|
| Q |
95 |
nnnnnnnnnca----ccatgttagaaatattcacggaaaaacatgttgtacaaaagaaacgaaaatagggaaagcatcctaatgatgacaaatgttatat |
190 |
Q |
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| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
15296698 |
ataaaaagcaaaaaaccatgttagaaatattcagggtaaaacatgttgtacaaaagaaacgaaaatagggaaagcattctaatgatgacagatgttatat |
15296599 |
T |
|
| Q |
191 |
acctgtgaggcaatggtaggagagc |
215 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
15296598 |
acctgtgaggcaatggtaggagagc |
15296574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 44509067 - 44509034
Alignment:
| Q |
184 |
gttatatacctgtgaggcaatggtaggagagcaa |
217 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
44509067 |
gttatatatctgtgaggcaatggtaggagagcaa |
44509034 |
T |
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