View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5448_low_11 (Length: 359)

Name: NF5448_low_11
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5448_low_11
NF5448_low_11
[»] chr8 (16 HSPs)
chr8 (20-352)||(4681132-4681464)
chr8 (37-348)||(4725935-4726246)
chr8 (88-303)||(4996118-4996333)
chr8 (47-313)||(4875216-4875482)
chr8 (24-282)||(4688833-4689091)
chr8 (126-318)||(4736533-4736725)
chr8 (204-316)||(21439612-21439724)
chr8 (47-352)||(4745493-4745798)
chr8 (123-299)||(4890066-4890242)
chr8 (129-299)||(10446560-10446730)
chr8 (126-314)||(4776671-4776859)
chr8 (129-314)||(10452209-10452394)
chr8 (126-310)||(4714829-4715013)
chr8 (126-309)||(4925084-4925267)
chr8 (126-326)||(4703457-4703657)
chr8 (199-287)||(4913690-4913778)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 4681464 - 4681132
Alignment:
20 ttggaaagggtaaatatatactttgtcgctccagtcaaaggtattgtactgaatatgctatctactgaccggtatacaggtatctcaggtccgtacataa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4681464 ttggaaagggtaaatatatactttgtcgctccagtcaaaggtattgtactgaatatgctatctactgaccggtatacaggtatctcaggtccgtacataa 4681365  T
120 ggattccattcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4681364 ggattccattcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacatt 4681265  T
220 aactgcatcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatattctgaattaat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4681264 aactgcatcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatattctgaattaat 4681165  T
320 atatcatctttggtgcttattcgtttcatctca 352  Q
    |||||||||||||||||||||||||||||||||    
4681164 atatcatctttggtgcttattcgtttcatctca 4681132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 37 - 348
Target Start/End: Complemental strand, 4726246 - 4725935
Alignment:
37 atactttgtcgctccagtcaaaggtattgtactgaatatgctatctactgaccggtatacaggtatctcaggtccgtacataaggattccattcactgtg 136  Q
    |||| |||| ||||||||||||||| ||||||| ||||||  ||||  || | | ||||| |||||||||||||| |||  ||      |||||||||||    
4726246 ataccttgtggctccagtcaaaggttttgtactaaatatggcatctggtgcctgatatactggtatctcaggtccataccaaaactcgtcattcactgtg 4726147  T
137 atattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaactgcatcgaaactaa 236  Q
    ||||||||   |||| |||||||||||||||| || ||||  ||| ||| ||| ||||||  |||||||||||||||||||||| |||| |   ||  ||    
4726146 atattgaacactctagtttcatttgctgccagcttctcaacctcattaaagtgtaaatatgcgtagtattggtcatttacattatctgcgttccaatgaa 4726047  T
237 attgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatattctgaattaatatatcatctttggtgct 336  Q
    |||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||| ||||||||    
4726046 attgtaaaggggcactggcatttattggtgtaacagcagtgttcatcacaactgctggtagtttataattattctgaattaatagatcatcattggtgct 4725947  T
337 tattcgtttcat 348  Q
    || |||||||||    
4725946 taatcgtttcat 4725935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 88 - 303
Target Start/End: Complemental strand, 4996333 - 4996118
Alignment:
88 ccggtatacaggtatctcaggtccgtacataaggattccattcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatg 187  Q
    ||||||| |||||||| ||||||| |||  ||||    ||||| ||||||||||||||| |||| |||||||||||||||| | |||||  ||| ||| |    
4996333 ccggtattcaggtatcacaggtccatacggaaggtgatcattctctgtgatattgaatgctctagtttcatttgctgccagttcttcaacctcattaaag 4996234  T
188 tgcaaatatatgtagtattggtcatttacattaactgcatcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaa 287  Q
    ||||||||| | ||||||||||||||||||||| |||| ||  ||  ||||||||  || |||||| |||||||||||||||||||||||||||||||||    
4996233 tgcaaatatgtatagtattggtcatttacattatctgcttcccaatgaaattgtaatggggcactgtcatttactggtgtaacagcagtgctcatcacaa 4996134  T
288 ctgctggtggtttata 303  Q
     |||||||||||||||    
4996133 ttgctggtggtttata 4996118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 47 - 313
Target Start/End: Original strand, 4875216 - 4875482
Alignment:
47 gctccagtcaaaggtattgtactgaatatgctatctactgaccggtatacaggtatctcaggtccgtacataaggattccattcactgtgatattgaatg 146  Q
    ||||||||||||||| ||  ||| || | | |||||||||||||||||||||||||  ||||||| |||| ||   | |||||||||||||| |||||||    
4875216 gctccagtcaaaggttttcgactaaaaaaggtatctactgaccggtatacaggtattacaggtccatacaaaaacttgccattcactgtgatgttgaatg 4875315  T
147 atctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaactgcatcgaaactaaattgtatagg 246  Q
    ||||| |||||||| ||||||| | |||||  ||| ||| |||||    |||||||||||| |||| ||||||| |   ||  |||  |||||||| |||    
4875316 atctagtttcattttctgccagctcttcaacctcattaaagtgcatgattatgtagtattgttcatatacattaccctgatgcaaatgaaattgtaaagg 4875415  T
247 agcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatattctga 313  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||  |||||||    
4875416 ggcactggcatttactggtgtaacagcagtgctcatcacaattgctggtagtttataataattctga 4875482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 4689091 - 4688833
Alignment:
24 aaagggtaaatatatactttgtcgctccagtcaaaggtattgtactgaatatgctatctactgaccggtatacaggtatctcaggtccgtacataaggat 123  Q
    |||||| ||||| |||| |||  ||||||||||||||| ||||||| | |||| |||  |||| | | | ||||||||||||||||||| ||| || |      
4689091 aaagggaaaatagataccttgcggctccagtcaaaggttttgtactaactatggtatgaactgcctgatgtacaggtatctcaggtccgaacaaaaagtc 4688992  T
124 tccattcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaact 223  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| || ||||  ||| ||| ||| ||||||   ||||||||||||||| ||||| ||    
4688991 tccattcactgtgatattgaatgatctagtttcattttctgccagcttctcaacctcattaaagtgaaaatatgcatagtattggtcattttcattatct 4688892  T
224 gcatcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcat 282  Q
     ||    ||  |||||| || || ||||||||||||||||||||| | |||||||||||    
4688891 acactccaatgaaattgcattggtgcactggcatttactggtgtagccgcagtgctcat 4688833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 126 - 318
Target Start/End: Complemental strand, 4736725 - 4736533
Alignment:
126 cattcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaactgc 225  Q
    |||||||||||||||||||   |||| |||||||| ||||||| | |||||  ||| ||| |||||  || | |||| || | ||||||||||||  |||    
4736725 cattcactgtgatattgaactctctagtttcattttctgccagctcttcaacctcattaaagtgcatgtagaggtagaatcgatcatttacattatttgc 4736626  T
226 atcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatattctgaattaa 318  Q
    |||  |   |||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||||| ||||    
4736625 atcccattgaaattgtataggggcactggcatttactggtgtaacagcagtgctcatcacaatttctggtggtttataactactctgatttaa 4736533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 21439612 - 21439724
Alignment:
204 attggtcatttacattaactgcatcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttata 303  Q
    ||||||||||||||||| |||||||  ||  ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||    
21439612 attggtcatttacattatctgcatcccaatgaaattgtaatggagcactggcatttactggtgtaacagcagtgctcatcacaattgctggtagttcata 21439711  T
304 aatattctgaatt 316  Q
    ||||||| |||||    
21439712 aatattcggaatt 21439724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 47 - 352
Target Start/End: Complemental strand, 4745798 - 4745493
Alignment:
47 gctccagtcaaaggtattgtactgaatatgctatctactgaccggtatacaggtatctcaggtccgtacataaggattccattcactgtgatattgaatg 146  Q
    ||||||||||||||| || ||||  ||||  ||| ||||||||||||| ||||||||||||||||  ||  ||   |  |||||||||||||||||||      
4745798 gctccagtcaaaggtcttatactagatatagtatttactgaccggtatccaggtatctcaggtccaaaccaaaacttgtcattcactgtgatattgaact 4745699  T
147 atctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaactgcatcgaaactaaattgtatagg 246  Q
     |||| |||||||||||||||| | |||||  ||| ||| |||||  || | |||| || | ||||||||||||  ||  ||  |    ||||||| |||    
4745698 ctctagtttcatttgctgccagctcttcaacctcattaaagtgcatgtagaggtagaatcgatcatttacattatatgtttcccattctaattgtaaagg 4745599  T
247 agcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatattctgaattaatatatcatctttggtgcttattcgtttc 346  Q
     |||||||||||||||||| || |||||||||||||||||| ||||||| |||||||  ||  ||||  ||||| ||| || |||||||||| |||||||    
4745598 ggcactggcatttactggtatagcagcagtgctcatcacaattgctggtagtttatagctaccctgacctaatagatcctcattggtgcttaatcgtttc 4745499  T
347 atctca 352  Q
    ||||||    
4745498 atctca 4745493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 4890066 - 4890242
Alignment:
123 ttccattcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaac 222  Q
    |||||||||||| || |||||||| |||| |||||||| ||||||| || ||||  ||| | | ||| |||||| ||||||||||||||||||||||| |    
4890066 ttccattcactgagagattgaatgctctagtttcattttctgccagcttctcaacctcattgaagtgaaaatatgtgtagtattggtcatttacattatc 4890165  T
223 tgcatcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtt 299  Q
    ||   |  |    ||||||| ||| ||||||||||||| ||||||||||||||||||||| |||  |||||||||||    
4890166 tgttccccattcgaattgtaaaggggcactggcatttagtggtgtaacagcagtgctcataacagttgctggtggtt 4890242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 299
Target Start/End: Complemental strand, 10446730 - 10446560
Alignment:
129 tcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaactgcatc 228  Q
    ||||| |||| ||||| | |||| ||||||||| ||||||||||||||  ||| ||| |||||  || | |||||||||||||||| ||||| ||||||     
10446730 tcactctgatgttgaacgctctagtttcatttggtgccagattttcaacctcattaaagtgcatgtagaggtagtattggtcatttccattatctgcatt 10446631  T
229 gaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtt 299  Q
      ||   |||| || |||  ||||||||||||||||||||| |||| |||||||||||| |||||||||||    
10446630 ccaatacaattctaaagggtcactggcatttactggtgtaagagcactgctcatcacaattgctggtggtt 10446560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 314
Target Start/End: Original strand, 4776671 - 4776859
Alignment:
126 cattcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaactgc 225  Q
    |||||||||||||||||||   |||| |||||||||| ||||| | |||||  ||| ||| ||| |  || | ||||||||| |||||| |||||  ||     
4776671 cattcactgtgatattgaactctctagtttcatttgcggccagctcttcaacctcattaaagtgaatgtagaggtagtattgatcattttcattatttga 4776770  T
226 atcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatattctgaa 314  Q
    |    ||  |||||||| ||| || || ||||||||||||||| | |||||||||||||||| || |||||||||||||||||||||||    
4776771 actccaatgaaattgtaaaggggcgctagcatttactggtgtagctgcagtgctcatcacaattgttggtggtttataaatattctgaa 4776859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 314
Target Start/End: Complemental strand, 10452394 - 10452209
Alignment:
129 tcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaactgcatc 228  Q
    ||||| |||| ||||| | |||| |||| |||| ||||||||||||||  ||| ||| |||||  || | |||||||  ||||||||||||| || ||||    
10452394 tcactctgatgttgaacgctctagtttcgtttggtgccagattttcaacctcattaaagtgcatgtagaggtagtatcagtcatttacattatctacatc 10452295  T
229 gaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatattctgaa 314  Q
      ||   ||||||| |||  |||| |||||||||||||||| |||| |||||||||||| ||| ||||||| | || |||||||||    
10452294 acaatgcaattgtaaagggtcactagcatttactggtgtaatagcactgctcatcacaattgcaggtggttcaaaattattctgaa 10452209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 310
Target Start/End: Complemental strand, 4715013 - 4714829
Alignment:
126 cattcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaactgc 225  Q
    |||||||||||||||| ||||||||  |||||||||||||||| | |||||  ||  ||| |||||  || |  ||| ||||||||||||||||| ||||    
4715013 cattcactgtgatattaaatgatctggtttcatttgctgccagctcttcaacctctttaaagtgcatgtagagatagaattggtcatttacattatctgc 4714914  T
226 atcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatattc 310  Q
     ||  |   ||| | || ||| ||||||| | || ||| ||||||||||||| ||||||||| ||||||| ||| |||| |||||    
4714913 ttcccatgaaaaatttaaaggggcactgggagtttctgatgtaacagcagtgttcatcacaattgctggtagttcataattattc 4714829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 309
Target Start/End: Original strand, 4925084 - 4925267
Alignment:
126 cattcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaactgc 225  Q
    |||||| |||||||||||| | |||| ||| |||| | ||||| || ||||  ||  ||| || ||| || | ||||||||| ||||||||| || ||||    
4925084 cattcagtgtgatattgaacgctctagttttatttccagccagcttctcaacctcgttaaagtacaagtagaggtagtattgatcatttacactatctgc 4925183  T
226 atcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatatt 309  Q
    ||   ||  |||||||| ||| || || ||||||||||||||| | || ||| ||||||||| |||||||||||||||| ||||    
4925184 ataccaatgaaattgtaaaggggcgctagcatttactggtgtagccgctgtggtcatcacaattgctggtggtttataactatt 4925267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 326
Target Start/End: Complemental strand, 4703657 - 4703457
Alignment:
126 cattcactgtgatattgaatgatctactttcatttgctgccagattttcaaattcagtaatgtgcaaatatatgtagtattggtcatttacattaactgc 225  Q
    |||||||||||||||| ||   |||| |||||||||||||||| | |||||  ||| ||| |||||  || | ||||||||| ||||||||||||  |||    
4703657 cattcactgtgatattaaactctctagtttcatttgctgccagctcttcaacctcattaaagtgcatgtaaaggtagtattgatcatttacattatttgc 4703558  T
226 a-tcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaactgctggtggtttataaatattctgaattaatatatc 324  Q
      || |    ||||| || ||| ||||||| ||||| || ||||||||| ||||||||||||| ||||||| ||  |||  ||||||||| ||||| |||    
4703557 tgtccatgaaaaatt-taaaggggcactgggatttaatgatgtaacagctgtgctcatcacaattgctggtagtgcatagttattctgaagtaatagatc 4703459  T
325 at 326  Q
    ||    
4703458 at 4703457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 4913690 - 4913778
Alignment:
199 gtagtattggtcatttacattaactgcatcgaaactaaattgtataggagcactggcatttactggtgtaacagcagtgctcatcacaa 287  Q
    ||||||||| |||||||||||| ||||||   |   || ||||| ||| |||||||||||||||| || ||||||||||||||| ||||    
4913690 gtagtattgctcatttacattatctgcattccattgaatttgtaaaggggcactggcatttactgttgcaacagcagtgctcataacaa 4913778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University