View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_21 (Length: 289)
Name: NF5448_low_21
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 24615846 - 24615574
Alignment:
| Q |
1 |
atgatagtgaggattttgttgaacaaagtgattttgaactggtggattttatgttggattcaaaatatgtgatagataaatttcacagccaaagagagga |
100 |
Q |
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| T |
24615846 |
atgatagtgaggattttgttgaacaaagtgattttgaactggtggattttatgttggattcaaaatatgtgatagataaatttcacagccaaagagagga |
24615747 |
T |
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| Q |
101 |
tatcattatttctattcacaacttattataactatatataaaaatagttcgactttattctactcttctggtgaatggttatgcagcatgtggtagtcac |
200 |
Q |
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| T |
24615746 |
tatcattatttctattcacaacttattataactatatataaaaatagttcgactttattctactcttctggtgaatggttatgcagcatgtggtagtcac |
24615647 |
T |
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| Q |
201 |
tggccttataagtgccaactctatatttcagggttagaaggggctccctagagaaactcctcagaattgtttc |
273 |
Q |
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| T |
24615646 |
tggccttataagtgccaactctatatttcagggttagaaggggctccctagagaaactcctcagaattgtttc |
24615574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 24115638 - 24115713
Alignment:
| Q |
193 |
gtagtcactggccttataagtgccaactctatatttcagggttagaaggggctccctagagaaactcctcagaatt |
268 |
Q |
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| T |
24115638 |
gtagtcacagaccttataagtactaactctatatttcagggttagaaggggctgcctagagaaactcctcataatt |
24115713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 24114954 - 24115032
Alignment:
| Q |
26 |
aagtgattttgaactggtggattttatgttggattcaaaatatgtgatagataaatttcacagccaaagagaggatatc |
104 |
Q |
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| T |
24114954 |
aagtgattttaagctggtcgatttttagttggattcaaaatatgtggtagataaatttctcagtcaaaaggaggatatc |
24115032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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