View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_23 (Length: 269)
Name: NF5448_low_23
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 42302143 - 42302372
Alignment:
| Q |
18 |
caaagtatttcaaagtctaatctttgactataaggacaatgaagcactgtctctaaagcaaacaattttagataaaccagtacaaatacaacaattagat |
117 |
Q |
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| T |
42302143 |
caaagtatttcaaagtctaatctt-gactataaggacaatgaagcaccgtctctaaagcaaacaattttagatcaaccagtacaaatacaacaattagat |
42302241 |
T |
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| Q |
118 |
caactagtacatagacattcatttcactatttgatttagtattgtttgctttacaggacaagcttccctgattgtagtgaagattagactcaaagacttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42302242 |
caactagtacatagacattcatttcactatttgatctagtattgtttgctttacaggacaagcttccctgattgtagtgaagattagactcaaagacttt |
42302341 |
T |
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| Q |
218 |
gatctaaattactatgatcctcactagctct |
248 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42302342 |
gatctaaattactatgatcctcactagctct |
42302372 |
T |
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