View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_24 (Length: 262)
Name: NF5448_low_24
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 2358454 - 2358678
Alignment:
| Q |
18 |
aaaaattattctacccttatgtgacttaactcacgtatgtatataacccaacgtaatttaagtcattttaaaatacaaccaatataacttaaatcatgtt |
117 |
Q |
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||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| | ||||||||| || |||||||||||||||||||||||| ||||| |
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| T |
2358454 |
aaaaattattctacc-ttacgtgacttaactcacgtatgtgtataacccaacgtgacttaagtcatattgaaatacaaccaatataacttaaattatgtt |
2358552 |
T |
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| Q |
118 |
tcgaataccgtgagttaactcatgttggtaacaaacatgcnnnnnnntttctttgcatatcaatataacatggtatagtatagagagagtataattaaat |
217 |
Q |
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|||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2358553 |
tcgaataccgtgagttaacttatgtcggtaacaaacatgcaaaaaaatttctttgcatatcaatataacatggtatagtatagagagagtgcaattaaat |
2358652 |
T |
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| Q |
218 |
ctagaaacaattgagcaccttgacac |
243 |
Q |
| |
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|| ||||||||||||||||||||||| |
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| T |
2358653 |
ctggaaacaattgagcaccttgacac |
2358678 |
T |
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