View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_26 (Length: 257)
Name: NF5448_low_26
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 33072832 - 33072601
Alignment:
| Q |
10 |
agatgaaagtaagccgacaactggtgatttgacggagaaggtgataaaggatgccacagaggcttccaaggagcttatgtttggcaatgttaaacttgag |
109 |
Q |
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| T |
33072832 |
agatgaaagtaagccgacaactggtgacttgacggagaaggtgataaaggatgccacagaggcttccaaggagcttatgttcggcaatgttaaacttgag |
33072733 |
T |
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| Q |
110 |
gatggtgacatacaagggtagaagagaaaagttttgaagcataaggaacttgaaagagctaagatgttagaggaagtgaagaagaatgattctgagaagg |
209 |
Q |
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| T |
33072732 |
gatggttacatgcaagggtagaagagaaaagttttgaagcataaggaacttgaaagagctaagatgttagaggaagtgaagaagaatgattctgagaagg |
33072633 |
T |
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| Q |
210 |
gtgaagctattgctaagaaggaagcaaggaaa |
241 |
Q |
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| T |
33072632 |
gtgaagctattgctaagaaggaagcatggaaa |
33072601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 43 - 241
Target Start/End: Complemental strand, 33082532 - 33082337
Alignment:
| Q |
43 |
ggagaaggtgataaaggatgccacagaggcttccaaggagcttatgtttggcaatgttaaacttgaggatggtgacatacaagggtagaagagaaaagtt |
142 |
Q |
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| T |
33082532 |
ggagaaggtgataaaggaggccacagaggctttaaaagagcttgtgtttggcaacgttaaacttcagaaaggtgaaatgcatggg---aagagaaaagtt |
33082436 |
T |
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| Q |
143 |
ttgaagcataaggaacttgaaagagctaagatgttagaggaagtgaagaagaatgattctgagaagggtgaagctattgctaagaaggaagcaaggaaa |
241 |
Q |
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| T |
33082435 |
ttcaaaaacaaggaacttgaaagagctaagaagttggaggaagtgaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaagcatggaaa |
33082337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 33092287 - 33092197
Alignment:
| Q |
152 |
aaggaacttgaaagagctaagatgttagaggaa-gtgaagaagaatgattctgagaagggtgaagctattgctaagaaggaagcaaggaaa |
241 |
Q |
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| T |
33092287 |
aaggaacttgaaagagctaagatgttagaggaaagtgaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaagcatggaaa |
33092197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 33099783 - 33099693
Alignment:
| Q |
152 |
aaggaacttgaaagagctaagatgttagaggaa-gtgaagaagaatgattctgagaagggtgaagctattgctaagaaggaagcaaggaaa |
241 |
Q |
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| T |
33099783 |
aaggaacttgaaagagctaagatgttagaggaaagtgaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaagcatggaaa |
33099693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 241
Target Start/End: Complemental strand, 3931683 - 3931486
Alignment:
| Q |
44 |
gagaaggtgataaaggatgccacagaggcttccaaggagcttatgtttggcaatgttaaacttgaggatggtgacatacaagggtagaagagaaaagttt |
143 |
Q |
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|||||||||| ||||||||| |||||||||| ||| ||||| ||||||| | ||||||||| |||||| || || | ||| ||||||||||| ||| |
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| T |
3931683 |
gagaaggtgaagaaggatgccgcagaggcttcgaagcagcttgtgtttggtcacgttaaacttcaggatgaggaaatgctaggtaagaagagaaaaattt |
3931584 |
T |
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| Q |
144 |
tgaagcataaggaacttgaaagagctaagatgttagaggaagtgaagaagaatgattctgagaagggtgaagctattgctaagaaggaagcaaggaaa |
241 |
Q |
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| T |
3931583 |
caaagcacaaggaacttgaaagggctaagaagttggaggaactgaagaagaatgatcctgagaagggtgaagctattgctaaaaaggaagcatggaaa |
3931486 |
T |
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