View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_29 (Length: 253)
Name: NF5448_low_29
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 8380271 - 8380030
Alignment:
| Q |
1 |
actttgcagatctatgtcttgtattaaatttgaaagttgtatattacattctcaattttcttgnnnnnnntgactatgaaaatcacaaaacggaaactac |
100 |
Q |
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| T |
8380271 |
actttgcagatctatgtcttgtattaaatttgaaagttgtatattacattctcaattttcttgaaaaaaatgactatgaaaatcacaaaactgaaactac |
8380172 |
T |
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| Q |
101 |
tcaatgtgacatggggaatttcggaaggcaattaaccgat----atctgataaacttaccttacattgtgtactctttcctctctgtcaacaaagcatgt |
196 |
Q |
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| T |
8380171 |
tcaatgtgacatggggaattttggaaggcaattaactgatgtatatctcataaacttaccttacattgtgtactctttcctctctgtcaacaaagcatgt |
8380072 |
T |
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| Q |
197 |
cgaatacaaattaaatccatgttaatatgaattcaaacatgt |
238 |
Q |
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| T |
8380071 |
cgaatacaaattaaatccatgttaatatgaattcaatcatgt |
8380030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 8364455 - 8364221
Alignment:
| Q |
3 |
tttgcagatctatgtcttgtattaaatttgaaagttgtatattacattctcaattttcttgnnnnnnntgactatgaaaatcacaaaacggaaactactc |
102 |
Q |
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| T |
8364455 |
tttgcagatttatgtcttgtattaaatttgaaagttgtatattacattctcaattttctagaaaaaa-tgactgtgaaaatcacaaaaacaaaactactc |
8364357 |
T |
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| Q |
103 |
aatgtgacatggggaatttcggaaggcaattaaccgatatctgataaacttaccttacattgtgtactctttcctctctgtcaacaaagcatgtcgaata |
202 |
Q |
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| T |
8364356 |
aaggtgacatggggaattttggaagctaattaaatgctatctcataaacttacttttcattgtgtactctttctcctctgtcaacaaagcatgttgaatg |
8364257 |
T |
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| Q |
203 |
caaattaaatccatgttaatatgaattcaaacatgt |
238 |
Q |
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| T |
8364256 |
caaatcaaagccatgttaatatgaattcaatcatgt |
8364221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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