View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_3 (Length: 557)
Name: NF5448_low_3
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 21156859 - 21156590
Alignment:
| Q |
1 |
tcagatctgagagcgacgtgctgg-tggtggcggtggtgtgatttgtgtactgttaaaagtgagaagagatgagatggaaagagagagtcgtaagtgaaa |
99 |
Q |
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||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
21156859 |
tcagatctgagtgcgaggtgctggatggtggcggtggtgtgatttgtgtactgttaaaagtgagaagagagaagatggaaagagagagtcgaaagtgaaa |
21156760 |
T |
|
| Q |
100 |
tacttttgctctgattggcattctaagaaaatgtgaaactataatggattgtggatgtttgaatacaactgtagcacctgctatgctttgtgttttgttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21156759 |
tacttttgctctgattggcattctaagaaaatgtgaaactataatggattgtggatgtttgaatacaactgtagcacctgctatgctttgtgttttgttt |
21156660 |
T |
|
| Q |
200 |
aaatcatattatttgttataactcatcgttgtccaccatttttgtgtttgcaagaccaaataaaatagac |
269 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21156659 |
aaatcatattacttgttataactcattgttgtccaccatttttgtgtttgcaagaccaaatcaaatagac |
21156590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 276 - 539
Target Start/End: Complemental strand, 21156560 - 21156299
Alignment:
| Q |
276 |
tgaatgcactaatcttcacaaaattttgctcaaatctgccccctgtacctttcatctgagaacctaatcccttattaatgacattttggttttaaatggt |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| |
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| T |
21156560 |
tgaatgcactaatcttcacaaaattttgctcaaatctgccccctgtacctttcatctgagaacctaatcccctattaatgatattttggttttaaacggt |
21156461 |
T |
|
| Q |
376 |
ctactaaagttggaaatgcagagcac--attaaaccaagagggtctcattctctttcaattttatgttaatcggaggaatattttctgcttattatatat |
473 |
Q |
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| T |
21156460 |
ctactaaagttggaaatgtagagcacatattaaaccaagagggtctcattctctttcaattctatgttaatcggaggaatattttctgcttattatatat |
21156361 |
T |
|
| Q |
474 |
ggttatgccgtaaattaaagtgtacgagtcaattgttagtaaacatagatttactgatatgttagt |
539 |
Q |
| |
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||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21156360 |
ggttatgacgta----aaagtgtatgagtcaattgttagtaaacatagatttactgatatgttagt |
21156299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 274 - 539
Target Start/End: Complemental strand, 4117270 - 4117011
Alignment:
| Q |
274 |
tttgaatgcactaatcttcacaaaattttgctcaaatctgccccctgtacctttcatctgagaacctaatcccttattaatgacattttggttttaaatg |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4117270 |
tttgaatgcactaatcttcacaaaattttgctcaaatctgccccctgtacctttcatctgagaacctaatccctt--taatgacattttggttttaaatg |
4117173 |
T |
|
| Q |
374 |
gtctactaaagttggaaatgcagagcacattaaaccaagagggtctcattctctttcaattttatgttaatcggaggaatattttctgcttattatatat |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
4117172 |
gtctactaaagttggaaatgcagagcacattaaaccaagagggtctcattctctttcaattctatgtcaatcggaggaatattttctgcttattatatat |
4117073 |
T |
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| Q |
474 |
ggttatgccgtaaattaaagtgtacgagtcaattgttagtaaacatagatttactgatatgttagt |
539 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117072 |
ggttatgccgta----aaagtgtatgagtcaattgttagtaaacatagatttactgatatgttagt |
4117011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 40 - 269
Target Start/End: Complemental strand, 4117530 - 4117301
Alignment:
| Q |
40 |
gatttgtgtactgttaaaagtgagaagagatgagatggaaagagagagtcgtaagtgaaatacttttgctctgattggcattctaagaaaatgtgaaact |
139 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117530 |
gatttgtgtactgttaaaagtgagaagagagaagatggaaagagagagtcgtaagtgaaatacttttgctctgattggcattctaagaaaatgtgaaact |
4117431 |
T |
|
| Q |
140 |
ataatggattgtggatgtttgaatacaactgtagcacctgctatgctttgtgttttgtttaaatcatattatttgttataactcatcgttgtccaccatt |
239 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4117430 |
ataatggattgtggatgtttgaatataactgtagcacctgctatgctttgtgttttgtttaaatcatattatttgttataactcattgttgtccaccatt |
4117331 |
T |
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| Q |
240 |
tttgtgtttgcaagaccaaataaaatagac |
269 |
Q |
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||||||||||||||||||||| |||||||| |
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| T |
4117330 |
tttgtgtttgcaagaccaaatcaaatagac |
4117301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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