View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_31 (Length: 250)
Name: NF5448_low_31
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12678332 - 12678571
Alignment:
| Q |
1 |
cttttcttgcattacaaacaaacagccattacataaagttttatgattattttcctaatcaaagtagaaaggggtttagacttagaatgtattgtatgca |
100 |
Q |
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| T |
12678332 |
cttttcttgcattacaaacaaacagccattacataaagttttatgattattttcctaatcaaagtggaaaggggtttagacttagaatgtattgtatgca |
12678431 |
T |
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| Q |
101 |
agtgatcttgaagaagtaaacattgatttattcacttatttgcatatgaatggtaatttagnnnnnnnnnnnnnnnntatctgtgtccttgaatcggcgt |
200 |
Q |
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| T |
12678432 |
agtgatcttgaagaagtaaacattgatttattcacttatttgcatatgaatggtaatttagaaaaaataaaataaaatatctgtgtccttgaatcggcgt |
12678531 |
T |
|
| Q |
201 |
gcgcaagatggaccatggtttgagagggtttatttctgtg |
240 |
Q |
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| T |
12678532 |
gcgcaagatggaccatggtttgagagggtttatttctgtg |
12678571 |
T |
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