View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_33 (Length: 241)
Name: NF5448_low_33
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_33 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 41581934 - 41581705
Alignment:
| Q |
16 |
caaataatataacttacatggaattttagaggcatcaaggatatgcagagcaa----acatacacttagcaaagctagaatgaacactaacatcatctat |
111 |
Q |
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| T |
41581934 |
caaataatataacttacatggaattttagaggcatcaagtatatgcagagcaattaaacatacacttagcaaagctagaatgaacactaacatcatctat |
41581835 |
T |
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| Q |
112 |
gacagattgacagttatgtattatcgtattctaatttgatagcttagtttctagtgtatcatagcaacaatagaaaaatgaaaattttacttacttgttt |
211 |
Q |
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| T |
41581834 |
gacagattgacagttatgtattatcgtattctaatttgatagcttagtttctagtttatcatagcaacaatagaaaaatgaaaattttacttacttgttt |
41581735 |
T |
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| Q |
212 |
taatttcttattgatcccataattgaaagc |
241 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41581734 |
taatttcttattgatcccataattgaaagc |
41581705 |
T |
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