View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5448_low_42 (Length: 234)

Name: NF5448_low_42
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5448_low_42
NF5448_low_42
[»] chr7 (4 HSPs)
chr7 (130-216)||(30907900-30907986)
chr7 (48-84)||(5924201-5924237)
chr7 (48-84)||(9355305-9355341)
chr7 (48-84)||(36072558-36072594)
[»] chr5 (3 HSPs)
chr5 (50-84)||(30774735-30774769)
chr5 (47-84)||(33347217-33347254)
chr5 (48-84)||(639504-639540)
[»] chr1 (1 HSPs)
chr1 (47-85)||(40094652-40094690)
[»] chr4 (1 HSPs)
chr4 (48-84)||(31786358-31786394)
[»] chr3 (1 HSPs)
chr3 (20-83)||(8340078-8340142)
[»] chr2 (1 HSPs)
chr2 (49-81)||(15161915-15161947)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 30907986 - 30907900
Alignment:
Q  130 ccctttgttatttacttgtttattttttaatatgaattcttccgatgtaaatttagtgcatactaatttaatacaccttgaatccaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30907986 ccctttgttatttacttgtttattttttaatatgaattcttccgatgtaaatttagtgcatactaatttaatacaccttgaatccaa 30907900  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 5924201 - 5924237
Alignment:
Q  48 tattttttacaaacgcggatatgaggatggatactat 84  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  5924201 tattttttacaaacgcggatatggggatgggtactat 5924237  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 9355305 - 9355341
Alignment:
Q  48 tattttttacaaacgcggatatgaggatggatactat 84  Q
    ||||||||||||||| || ||||||||||||||||||    
T  9355305 tattttttacaaacgtgggtatgaggatggatactat 9355341  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 36072594 - 36072558
Alignment:
Q  48 tattttttacaaacgcggatatgaggatggatactat 84  Q
    |||||||||||||||||| |||| |||||||||||||    
T  36072594 tattttttacaaacgcgggtatggggatggatactat 36072558  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 30774769 - 30774735
Alignment:
Q  50 ttttttacaaacgcggatatgaggatggatactat 84  Q
    ||||||||||||||||||||| |||||||||||||    
T  30774769 ttttttacaaacgcggatatggggatggatactat 30774735  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 33347217 - 33347254
Alignment:
Q  47 atattttttacaaacgcggatatgaggatggatactat 84  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  33347217 atattttttacaaacgcggatatggggatgggtactat 33347254  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 639504 - 639540
Alignment:
Q  48 tattttttacaaacgcggatatgaggatggatactat 84  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  639504 tattttttacaaacgcggatataaggatgggtactat 639540  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 40094652 - 40094690
Alignment:
Q  47 atattttttacaaacgcggatatgaggatggatactatg 85  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  40094652 atattttttacaaacgcgggtatggggatggatactatg 40094690  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 31786394 - 31786358
Alignment:
Q  48 tattttttacaaacgcggatatgaggatggatactat 84  Q
    |||||||||||||||||| |||||||||| |||||||    
T  31786394 tattttttacaaacgcgggtatgaggatgaatactat 31786358  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 8340142 - 8340078
Alignment:
Q  20 attaaagttgttgtccacaaggatac-gatattttttacaaacgcggatatgaggatggatacta 83  Q
    |||||||||||| | ||| ||| ||| || ||||||||||||||||| |||| ||||||||||||    
T  8340142 attaaagttgtttttcacgagggtacagacattttttacaaacgcgggtatggggatggatacta 8340078  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 15161947 - 15161915
Alignment:
Q  49 attttttacaaacgcggatatgaggatggatac 81  Q
    |||||||||||||||||||||| ||||||||||    
T  15161947 attttttacaaacgcggatatggggatggatac 15161915  T

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