View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5448_low_5 (Length: 455)

Name: NF5448_low_5
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5448_low_5
NF5448_low_5
[»] chr4 (21 HSPs)
chr4 (19-441)||(27724909-27725330)
chr4 (32-104)||(6987708-6987780)
chr4 (19-116)||(2996592-2996689)
chr4 (19-104)||(53315357-53315442)
chr4 (32-104)||(11264332-11264404)
chr4 (32-104)||(27123319-27123391)
chr4 (28-85)||(52419581-52419638)
chr4 (46-102)||(28749888-28749944)
chr4 (48-107)||(2874607-2874666)
chr4 (32-78)||(19429479-19429525)
chr4 (32-109)||(28406938-28407015)
chr4 (32-89)||(41097223-41097280)
chr4 (19-83)||(3549509-3549573)
chr4 (38-78)||(21953005-21953045)
chr4 (19-78)||(6428075-6428134)
chr4 (32-77)||(25896842-25896887)
chr4 (30-115)||(56007699-56007784)
chr4 (146-186)||(4071832-4071872)
chr4 (46-78)||(14986958-14986990)
chr4 (39-102)||(28749763-28749829)
chr4 (36-104)||(45128281-45128349)
[»] chr6 (38 HSPs)
chr6 (44-116)||(2455829-2455901)
chr6 (32-104)||(2460118-2460190)
chr6 (32-104)||(8420164-8420236)
chr6 (32-116)||(9833078-9833161)
chr6 (35-78)||(9027635-9027678)
chr6 (19-98)||(27595521-27595600)
chr6 (32-78)||(32917254-32917300)
chr6 (32-104)||(32171350-32171422)
chr6 (41-104)||(725631-725694)
chr6 (32-98)||(27693406-27693472)
chr6 (32-81)||(2027765-2027814)
chr6 (49-102)||(27615257-27615310)
chr6 (19-75)||(733131-733187)
chr6 (36-116)||(32577957-32578037)
chr6 (154-186)||(32980491-32980523)
chr6 (36-116)||(34939532-34939612)
chr6 (53-104)||(9667973-9668024)
chr6 (32-71)||(30865547-30865586)
chr6 (34-104)||(29957891-29957961)
chr6 (154-187)||(2514651-2514684)
chr6 (32-81)||(9202957-9203006)
chr6 (30-103)||(20368145-20368218)
chr6 (146-183)||(27595647-27595684)
chr6 (37-74)||(31594356-31594393)
chr6 (38-75)||(34404600-34404637)
chr6 (19-88)||(34538172-34538241)
chr6 (40-88)||(740861-740909)
chr6 (36-116)||(2205562-2205641)
chr6 (32-104)||(3738100-3738172)
chr6 (44-116)||(4420662-4420734)
chr6 (38-74)||(10616514-10616550)
chr6 (59-103)||(17770448-17770492)
chr6 (34-78)||(27857415-27857459)
chr6 (38-78)||(31338033-31338073)
chr6 (32-104)||(33116615-33116687)
chr6 (36-116)||(33887849-33887929)
chr6 (32-104)||(34404414-34404486)
chr6 (34-102)||(34939777-34939845)
[»] chr8 (26 HSPs)
chr8 (34-116)||(31875564-31875646)
chr8 (35-86)||(30987961-30988012)
chr8 (35-104)||(8558691-8558760)
chr8 (34-88)||(4055585-4055639)
chr8 (32-88)||(14949913-14949969)
chr8 (32-76)||(21130671-21130715)
chr8 (36-88)||(43709309-43709361)
chr8 (30-104)||(27645935-27646009)
chr8 (35-88)||(6509273-6509326)
chr8 (19-72)||(30191095-30191148)
chr8 (31-72)||(37461205-37461246)
chr8 (30-78)||(5069754-5069802)
chr8 (32-116)||(7918413-7918497)
chr8 (41-100)||(12361227-12361286)
chr8 (36-78)||(9540967-9541009)
chr8 (32-78)||(9572927-9572973)
chr8 (32-78)||(11569424-11569470)
chr8 (43-101)||(37740405-37740462)
chr8 (36-78)||(40071806-40071848)
chr8 (154-187)||(1470944-1470977)
chr8 (146-187)||(4558747-4558788)
chr8 (42-87)||(29168642-29168687)
chr8 (49-98)||(29262858-29262907)
chr8 (50-78)||(25869251-25869279)
chr8 (36-72)||(30600320-30600356)
chr8 (32-72)||(32156971-32157011)
[»] chr7 (26 HSPs)
chr7 (36-116)||(27626094-27626174)
chr7 (32-110)||(44808183-44808261)
chr7 (32-103)||(48157087-48157158)
chr7 (43-85)||(5269536-5269578)
chr7 (32-73)||(39542267-39542308)
chr7 (32-104)||(22387863-22387935)
chr7 (44-116)||(36370688-36370760)
chr7 (36-88)||(36598327-36598379)
chr7 (43-99)||(45078314-45078370)
chr7 (37-85)||(47427275-47427323)
chr7 (38-101)||(3500940-3501003)
chr7 (48-107)||(29290361-29290420)
chr7 (44-79)||(44989908-44989943)
chr7 (36-78)||(36537965-36538007)
chr7 (32-78)||(39360080-39360126)
chr7 (145-187)||(49060489-49060531)
chr7 (54-115)||(2013214-2013275)
chr7 (19-88)||(12834916-12834985)
chr7 (32-81)||(25422380-25422429)
chr7 (19-104)||(28165122-28165207)
chr7 (41-78)||(33645937-33645974)
chr7 (49-78)||(39568308-39568337)
chr7 (44-89)||(44686976-44687021)
chr7 (32-72)||(28727730-28727770)
chr7 (38-70)||(31149705-31149737)
chr7 (38-70)||(31167997-31168029)
[»] chr3 (23 HSPs)
chr3 (32-116)||(37273153-37273237)
chr3 (38-119)||(49465909-49465990)
chr3 (34-104)||(20192575-20192645)
chr3 (32-86)||(25182954-25183008)
chr3 (31-99)||(52323860-52323928)
chr3 (30-88)||(24624257-24624315)
chr3 (32-76)||(1810036-1810080)
chr3 (33-72)||(2606278-2606317)
chr3 (35-78)||(14598523-14598566)
chr3 (32-71)||(40880915-40880954)
chr3 (35-78)||(42817192-42817235)
chr3 (32-78)||(11039306-11039352)
chr3 (32-78)||(21574547-21574593)
chr3 (36-78)||(31403075-31403117)
chr3 (30-88)||(36646347-36646405)
chr3 (32-78)||(37155058-37155104)
chr3 (32-78)||(37200413-37200459)
chr3 (32-78)||(49772635-49772681)
chr3 (146-187)||(1395620-1395661)
chr3 (19-104)||(26603224-26603309)
chr3 (32-88)||(29113509-29113565)
chr3 (36-88)||(31010449-31010501)
chr3 (44-104)||(43115087-43115147)
[»] chr2 (31 HSPs)
chr2 (19-119)||(1741986-1742086)
chr2 (32-116)||(25661126-25661210)
chr2 (32-116)||(34652003-34652087)
chr2 (52-116)||(36852491-36852555)
chr2 (34-89)||(11344739-11344794)
chr2 (19-78)||(28803484-28803543)
chr2 (19-68)||(3973609-3973658)
chr2 (33-86)||(4550796-4550849)
chr2 (46-103)||(10285892-10285949)
chr2 (34-86)||(1494415-1494467)
chr2 (34-110)||(43985234-43985310)
chr2 (30-101)||(43456672-43456743)
chr2 (30-72)||(43808621-43808663)
chr2 (25-78)||(12785920-12785973)
chr2 (33-88)||(9478346-9478401)
chr2 (44-78)||(9878661-9878695)
chr2 (46-88)||(12215854-12215896)
chr2 (44-86)||(17221519-17221561)
chr2 (36-77)||(1830103-1830144)
chr2 (59-104)||(1939326-1939371)
chr2 (19-56)||(10190345-10190382)
chr2 (35-72)||(15120246-15120283)
chr2 (30-103)||(18884899-18884972)
chr2 (146-187)||(25609745-25609786)
chr2 (31-88)||(32821856-32821913)
chr2 (43-88)||(43065428-43065473)
chr2 (39-104)||(43205340-43205405)
chr2 (19-75)||(1318296-1318352)
chr2 (44-116)||(9595277-9595349)
chr2 (34-113)||(33231921-33231998)
chr2 (34-78)||(39962268-39962312)
[»] chr5 (25 HSPs)
chr5 (30-110)||(11297161-11297241)
chr5 (33-78)||(38047847-38047892)
chr5 (36-116)||(37611186-37611266)
chr5 (36-116)||(37787916-37787996)
chr5 (36-104)||(41052899-41052967)
chr5 (37-88)||(32172700-32172751)
chr5 (19-116)||(36639541-36639638)
chr5 (34-78)||(16944944-16944988)
chr5 (32-104)||(35095753-35095825)
chr5 (19-78)||(10152391-10152450)
chr5 (44-115)||(11457119-11457189)
chr5 (43-102)||(11700356-11700415)
chr5 (19-102)||(29590584-29590666)
chr5 (43-78)||(40499704-40499739)
chr5 (41-115)||(13604825-13604899)
chr5 (32-78)||(14980566-14980612)
chr5 (34-88)||(28586735-28586789)
chr5 (32-78)||(35960470-35960516)
chr5 (38-71)||(12242683-12242716)
chr5 (38-78)||(2569668-2569708)
chr5 (38-78)||(14364279-14364319)
chr5 (32-88)||(29336677-29336733)
chr5 (154-186)||(35960364-35960396)
chr5 (32-104)||(37526166-37526238)
chr5 (32-104)||(37690603-37690675)
[»] chr1 (34 HSPs)
chr1 (33-76)||(38867799-38867842)
chr1 (38-87)||(11560535-11560584)
chr1 (19-104)||(30259440-30259525)
chr1 (31-78)||(15579539-15579586)
chr1 (32-86)||(1662622-1662676)
chr1 (36-77)||(4033988-4034029)
chr1 (42-83)||(17631079-17631120)
chr1 (32-77)||(23407489-23407534)
chr1 (32-77)||(49692019-49692064)
chr1 (43-115)||(44031977-44032049)
chr1 (32-79)||(4549508-4549555)
chr1 (32-103)||(5591933-5592004)
chr1 (41-104)||(15515572-15515635)
chr1 (45-88)||(17628646-17628689)
chr1 (35-78)||(37941955-37941998)
chr1 (146-185)||(45234148-45234187)
chr1 (45-88)||(45327627-45327670)
chr1 (36-79)||(49521776-49521819)
chr1 (22-72)||(28467496-28467546)
chr1 (37-107)||(29723517-29723587)
chr1 (34-100)||(37811887-37811953)
chr1 (32-78)||(44422756-44422802)
chr1 (32-81)||(16980857-16980906)
chr1 (43-88)||(27145589-27145634)
chr1 (146-187)||(50319241-50319282)
chr1 (32-104)||(4868431-4868502)
chr1 (44-104)||(6262051-6262111)
chr1 (38-78)||(6262795-6262835)
chr1 (18-86)||(14737679-14737747)
chr1 (44-100)||(17420238-17420294)
chr1 (42-78)||(19412574-19412610)
chr1 (19-75)||(23373267-23373323)
chr1 (44-88)||(27145968-27146012)
chr1 (39-87)||(43771885-43771933)
[»] scaffold0024 (1 HSPs)
scaffold0024 (32-71)||(27640-27679)
[»] scaffold0012 (1 HSPs)
scaffold0012 (49-78)||(38649-38678)
[»] scaffold0311 (1 HSPs)
scaffold0311 (32-112)||(10584-10664)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 27725330 - 27724909
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatagat 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725330 ataagcacatatacgactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatagat 27725231  T
Q  119 tgtnnnnnnnncttatcgcttttaccaaaaataacttgactttattttatgttttattatagaaatagcaaacacttatagtactataagtgcttaatca 218  Q
    |||        |||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725230 tgtaaaaaaaacttatcacttttaccgaaaataacttgactt-attttatgttttattatagaaatagcaaacacttatagtactataagtgcttaatca 27725132  T
Q  219 agccgttaatccaaacatgatcaaagttagtttgctagcaaagaaacgagagcgctacctgctcaacaatcttcttggaggaaggtgcattacattttcc 318  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27725131 agccgttaatccaaacatgaccaaagttagtttgctagcaaagaaacgagagctctacctgctcaacaatcttcttggaggaaggtgcattacattttcc 27725032  T
Q  319 catagtaaagcttccacagaaacccgaaggatcaccaaagcttgcaaattcaacagccgtaannnnnnnctggtctggacatgtgataaaagcttctgga 418  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||| ||||| ||||||||||||||||||    
T  27725031 cataataaagcttccacagaaacccgaaggatcaccaaagcttgcaaactcaacagccgtaatttttttctggtccggacacgtgataaaagcttctgga 27724932  T
Q  419 gtcagattctctcccacaggttc 441  Q
    ||||||||||| |||||| ||||    
T  27724931 gtcagattctcccccacacgttc 27724909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 6987708 - 6987780
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||||||    
T  6987708 agactgtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttatttccataagc 6987780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 2996689 - 2996592
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||| | | |||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||| | |||| |||| || || ||||||||    
T  2996689 ataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatag 2996592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 53315442 - 53315357
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||||||||||| |||| ||||||||||| ||| ||| ||| |||||||||||| ||||||| || | |||| |||||||    
T  53315442 ataagcacatataagactatttgtgagagcttatgaaaacaacatatcacatgtccataagctatttttaacttattttcataagc 53315357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 11264404 - 11264332
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||| |||||| ||| |||  ||||||||||||||||||||||| ||||||| | ||||||||||||    
T  11264404 agactgtttgggagagcatatagaatcaacttatgacatgtccataaactgttttcaacttatttccataagc 11264332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 27123319 - 27123391
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||  | ||||||| | ||||||||||||    
T  27123319 agactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagc 27123391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 52419581 - 52419638
Alignment:
Q  28 tataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattt 85  Q
    ||||||||||||||||||| |||||| ||| ||||||| |||||| ||||||||||||    
T  52419581 tataagactgtttgagagaccttatgaaaacaacttattacatgttcataaactattt 52419638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 28749888 - 28749944
Alignment:
Q  46 agcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataa 102  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| | |||| |||||    
T  28749888 agcttatggaaataacttattacatgtccataaactgttttcaactcattttcataa 28749944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 2874607 - 2874666
Alignment:
Q  48 cttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcact 107  Q
    |||||||||| |||||||||||||||||||| ||||||||   | |||||||||||||||    
T  2874607 cttatggaaacaacttatgacatgtccataatctattttccgcttatttccataagcact 2874666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 19429479 - 19429525
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||    
T  19429479 agactgtttgggagagcttatggagaaaacttatgacatgtccataa 19429525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 28407015 - 28406938
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttc 109  Q
    |||||| ||||||||||||| ||||| |||| ||||||| | |||||||||||| ||  | |||||||||||| ||||    
T  28407015 agactggttgagagagcttacggaaacaactcatgacatattcataaactatttgcagcttatttccataagctcttc 28406938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 41097223 - 41097280
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaa 89  Q
    |||||||| | |||||||||| |||| |||| ||||||||||||||| ||||||||||    
T  41097223 agactgttcgggagagcttatagaaacaactaatgacatgtccataagctattttcaa 41097280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 3549509 - 3549573
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactat 83  Q
    |||||||| ||| ||||||||||||||| |||||| |||||   ||||||||||||| |||||||    
T  3549509 ataagcacttatgagactgtttgagagaacttatgaaaatagtgtatgacatgtccacaaactat 3549573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 21953045 - 21953005
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  21953045 tttgggagagcttatggaaagaacttatgacatgtccataa 21953005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 6428134 - 6428075
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||| | | |||| ||||||||||| ||||| ||| ||||||||||||||||||||    
T  6428134 ataagcacttgtgagacagtttgagagagattatgaaaacaacttatgacatgtccataa 6428075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 25896887 - 25896842
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccata 77  Q
    |||||||||  |||||||||| |||||| |||||||||||||||||    
T  25896887 agactgtttaggagagcttatagaaatagcttatgacatgtccata 25896842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 56007784 - 56007699
Alignment:
Q  30 taagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagata 115  Q
    |||||||||||||||||||| ||  || |||||||||||||||| ||   ||||||| || | ||||| |||||| || |||||||    
T  56007784 taagactgtttgagagagctaatacaagtaacttatgacatgtcgattgtctattttgaacttatttctataagctctccaagata 56007699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 4071872 - 4071832
Alignment:
Q  146 aaaataacttgactttattttatgttttattatagaaatag 186  Q
    ||||||| ||||||||||||||| |||| ||||||||||||    
T  4071872 aaaataatttgactttattttatcttttgttatagaaatag 4071832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 14986958 - 14986990
Alignment:
Q  46 agcttatggaaataacttatgacatgtccataa 78  Q
    |||||||| ||||||||||||||||||||||||    
T  14986958 agcttatgaaaataacttatgacatgtccataa 14986990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 28749763 - 28749829
Alignment:
Q  39 ttgagagagcttatggaaataacttatgacatgtcc---ataaactattttcaaatgatttccataa 102  Q
    |||||||||||||||||||||||||||  |||||||   ||||||| ||||||| | |||| |||||    
T  28749763 ttgagagagcttatggaaataacttatttcatgtccgtaataaactgttttcaactcattttcataa 28749829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 45128281 - 45128349
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||||||||||||||| |||| ||  ||||||||| | || ||||||  | ||||||||||||    
T  45128281 tgtttgagagagcttatggaaacaactgatatcatgtccatgagctgttttcagcttatttccataagc 45128349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 2455901 - 2455829
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||| || ||||||||    
T  2455901 agagcttatggaaacaacttatgacatgcccataaactattttcaacttatttccataagctctccaagatag 2455829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 2460118 - 2460190
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||  | ||||||| | ||||||||||||    
T  2460118 agactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagc 2460190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 8420164 - 8420236
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||| | |||||||||| |||||| ||||||||||||||| || |||||||||| | ||||||||||||    
T  8420164 agactgttagtgagagcttatagaaatagcttatgacatgtccacaagctattttcaacttatttccataagc 8420236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 9833078 - 9833161
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    ||||| ||||||||| |||||||||| ||| |||| |||||||||||| ||||||||| | |||||||||||| ||||| |||||    
T  9833078 agactatttgagagatcttatggaaa-aacatatggcatgtccataaattattttcaacttatttccataagctcttcatgatag 9833161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 9027678 - 9027635
Alignment:
Q  35 ctgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  9027678 ctgtttgaaagagcttatggaaataacttatgacatgtccataa 9027635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 27595521 - 27595600
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttcc 98  Q
    |||||||| ||| |||||||||| ||||  ||||||||| |||||||||||||| ||||| |||||||||| | ||||||    
T  27595521 ataagcacttatgagactgtttgggagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttcc 27595600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 32917300 - 32917254
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  32917300 agactgtttgggagagcttatggaaacaacttatgacatgtccataa 32917254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 32171350 - 32171422
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||||||||||||||| ||| | ||||||||| ||||| || |||||||||  | ||||||||||||    
T  32171350 agactgtttgagagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataagc 32171422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 725631 - 725694
Alignment:
Q  41 gagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||||||||||| ||| |||||||||||||||| || ||||||||||  | ||||||||||||    
T  725631 gagagagcttatgaaaacaacttatgacatgtccgtagactattttcagcttatttccataagc 725694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 27693406 - 27693472
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttcc 98  Q
    ||||| |||||||||  ||||||||| |||||||||||||| ||||| |||||||||| | ||||||    
T  27693406 agactatttgagagaatttatggaaacaacttatgacatgttcataagctattttcaagtaatttcc 27693472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 2027765 - 2027814
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaact 81  Q
    |||||||||| |||||||||| |||| ||||||||||||||| |||||||    
T  2027765 agactgtttgggagagcttatagaaacaacttatgacatgtcaataaact 2027814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 27615257 - 27615310
Alignment:
Q  49 ttatggaaataacttatgacatgtccataaactattttcaaatgatttccataa 102  Q
    ||||||||| |||||||||||||| ||||| |||||||||| | ||||||||||    
T  27615257 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttccataa 27615310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 733131 - 733187
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtcca 75  Q
    |||||||| ||||  ||| ||||| |||||| |||||||||||||||||||||||||    
T  733131 ataagcacttatagaactctttgatagagctgatggaaataacttatgacatgtcca 733187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 32577957 - 32578037
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||||||||||||| ||| |||||||||||||||| | | || ||||||  | ||||||||| || ||||| |||||    
T  32577957 tgtttgagagagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttatttccatatgctcttcaggatag 32578037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 32980523 - 32980491
Alignment:
Q  154 ttgactttattttatgttttattatagaaatag 186  Q
    |||||||||||||||||||||||||||||||||    
T  32980523 ttgactttattttatgttttattatagaaatag 32980491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 34939612 - 34939532
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||||||||||||||||| ||||||||||| |||| |||  | ||||||  | |||||||||| | ||||| |||||    
T  34939612 tgtttgagagagcttatggaaacaacttatgacacgtccgtaagttgttttcagcttatttccataacctcttcaggatag 34939532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 9667973 - 9668024
Alignment:
Q  53 ggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||| |||||||||||||||||||| || ||||||| | ||||||||||||    
T  9667973 ggaaacaacttatgacatgtccataagctgttttcaacttatttccataagc 9668024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 30865586 - 30865547
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatg 71  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  30865586 agacagtttaagagagcttatggaaataacttatgacatg 30865547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 29957891 - 29957961
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||||||||||||||||||| ||  ||| ||||||||| ||| | |||||||||  | ||||||||||||    
T  29957891 actgtttgagagagcttatgggaaatactcatgacatgttcatgatctattttcagcttatttccataagc 29957961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 2514684 - 2514651
Alignment:
Q  154 ttgactttattttatgttttattatagaaatagc 187  Q
    ||||||||||||||| ||||||||||||||||||    
T  2514684 ttgactttattttatcttttattatagaaatagc 2514651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 9202957 - 9203006
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaact 81  Q
    ||||||||||||||| |||||| |||||||| ||| ||||| ||||||||    
T  9202957 agactgtttgagagaacttatgaaaataactcatggcatgttcataaact 9203006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 20368145 - 20368218
Alignment:
Q  30 taagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataag 103  Q
    ||||||| |||| |||| |||||| ||| |||||||||||||| ||||| ||| |||||| | |||| ||||||    
T  20368145 taagactatttgggagaacttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataag 20368218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 27595647 - 27595684
Alignment:
Q  146 aaaataacttgactttattttatgttttattatagaaa 183  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  27595647 aaaataatttgactttattttatcttttattatagaaa 27595684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 31594356 - 31594393
Alignment:
Q  37 gtttgagagagcttatggaaataacttatgacatgtcc 74  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  31594356 gtttgagagaggttatggaaacaacttatgacatgtcc 31594393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 34404637 - 34404600
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatgtcca 75  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  34404637 tttgggagagcttatggaaacaacttatgacatgtcca 34404600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 34538172 - 34538241
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||||| | | ||||| ||||||||| |||||  ||| | |||| |||||||||||||||||||||||    
T  34538172 ataagcacttgtgagactatttgagagatcttataaaaacagcttacgacatgtccataaactattttca 34538241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 740861 - 740909
Alignment:
Q  40 tgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    ||||||||||| |||||| |||||||||||||| |||||  ||||||||    
T  740861 tgagagagcttgtggaaacaacttatgacatgttcataagttattttca 740909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 2205562 - 2205641
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    ||||| |||||||||||||||| || ||| |||||||  ||||||||| ||||  | |||||||||||| || ||||||||    
T  2205562 tgttttagagagcttatggaaacaa-ttaggacatgtttataaactatattcagcttatttccataagctctccaagatag 2205641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 3738172 - 3738100
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||||||||| ||| ||| |||||| | |||||||||||||||||| ||  |||||| | ||||| ||||||    
T  3738172 agactgtttgaaagatcttgtggaaacagcttatgacatgtccataagctgctttcaacttatttcaataagc 3738100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 4420734 - 4420662
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    ||||||||| |||| || ||||||||||| ||||| || ||||||  | |||||||||||| || ||||||||    
T  4420734 agagcttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagatag 4420662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 10616514 - 10616550
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatgtcc 74  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  10616514 tttgggagagcttatggaaacaacttatgacatgtcc 10616550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 17770448 - 17770492
Alignment:
Q  59 aacttatgacatgtccataaactattttcaaatgatttccataag 103  Q
    |||||||||||||| |||||||||||||||| | |||| ||||||    
T  17770448 aacttatgacatgttcataaactattttcaacttattttcataag 17770492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 27857459 - 27857415
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||| ||||||||||| ||| |||||||||||| |||||||    
T  27857459 actgtttgggagagcttatgaaaacaacttatgacatctccataa 27857415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 31338073 - 31338033
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||| ||||||||||| ||| ||||||||||||||||||||    
T  31338073 tttgtgagagcttatgaaaacaacttatgacatgtccataa 31338033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 33116687 - 33116615
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||||| ||  ||||| ||| |||||||||||||| |||||||| |||| |  | ||||||||||||    
T  33116687 agactgtttgagggaatttatgaaaacaacttatgacatgtgcataaactcttttaagtttatttccataagc 33116615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 33887929 - 33887849
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||||||  ||||| ||||| |||||||||||| || ||  | ||||||| | ||||||||||||| |||| |||||    
T  33887929 tgtttgagagaatttatgaaaatagcttatgacatgttcacaagttgttttcaacttatttccataagcatttcaggatag 33887849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 34404486 - 34404414
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||||||||| |||||||||||||| | ||||||   ||| ||||||||||||||   | ||||||||||||    
T  34404486 agactgtttgaaagagcttatggaaacagcttatgctctgtgcataaactattttcccttcatttccataagc 34404414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 34939845 - 34939777
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataa 102  Q
    |||||||  ||||||||| ||||| | ||||||||||||||||||| | ||||||  | ||||||||||    
T  34939845 actgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataa 34939777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 31875564 - 31875646
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| | |||||||| | |||| ||||||| ||| |||||||    
T  31875564 actgtttgagaaagcttatggaaacaacttatgacatgtccataagccattttcaacttattttcataagctcttgaagatag 31875646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 30987961 - 30988012
Alignment:
Q  35 ctgtttgagagagcttatggaaataacttatgacatgtccataaactatttt 86  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  30987961 ctgtttgagagagcttatggaaacaacttatgacatgtccataagctatttt 30988012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 8558760 - 8558691
Alignment:
Q  35 ctgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||| || |||| |||||||    
T  8558760 ctgtttgggagagcttatggaaacaacttgtgacatgtccatcaactattttcagattattttcataagc 8558691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 4055585 - 4055639
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||||| ||||||    
T  4055585 actgtttgggagagtttatagaaataacttatgacatgtccataaactgttttca 4055639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 14949969 - 14949913
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||| || ||||||    
T  14949969 agactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttca 14949913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 21130715 - 21130671
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccat 76  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||    
T  21130715 agactgtttgagagagcttatggaaatagcttttgacatgtccat 21130671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 43709361 - 43709309
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||| | ||||||||||||||||||||||||||||| |||| |||||||||    
T  43709361 tgtttgggtgagcttatggaaataacttatgacatgtctataagctattttca 43709309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 27646009 - 27645935
Alignment:
Q  30 taagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||| ||||||||||||||||| | | |||||||||||| || |||| |||||||||| | ||||| ||||||    
T  27646009 taagaccgtttgagagagcttatgcatacaacttatgacatatctataagctattttcaacttatttctataagc 27645935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 6509273 - 6509326
Alignment:
Q  35 ctgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||||||||||||||| |||| | ||||||||||| | ||||||||||||||    
T  6509273 ctgtttgagagagcttatagaaacagcttatgacatgcctataaactattttca 6509326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 30191095 - 30191148
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgt 72  Q
    |||||||| | | |||||||||| ||||||||||||||| ||||||||||||||    
T  30191095 ataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatgt 30191148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 37461246 - 37461205
Alignment:
Q  31 aagactgtttgagagagcttatggaaataacttatgacatgt 72  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  37461246 aagactgtatgagagagtttatggaaataacttatgacatgt 37461205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 5069802 - 5069754
Alignment:
Q  30 taagactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||||||||||||||||||||| | ||||| |||||| |||||    
T  5069802 taagactgtttgagagagcttatggaaacatcttataacatgttcataa 5069754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 7918413 - 7918497
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||||| ||||||||||| ||| |||||| ||||||| ||||| || ||| ||| | ||||| |||||| || ||||||||    
T  7918413 agactgtttgggagagcttatgaaaacaacttaagacatgttcataagctgtttccaacttatttcaataagctctccaagatag 7918497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 12361286 - 12361227
Alignment:
Q  41 gagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccat 100  Q
    |||||| ||||| |||||| |||||||||||||||||| || ||||||| | ||||||||    
T  12361286 gagagatcttatagaaatagcttatgacatgtccataagctgttttcaacttatttccat 12361227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 9540967 - 9541009
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||| ||||||||||||||| | ||||||||||||||||||    
T  9540967 tgtttgggagagcttatggaaacatcttatgacatgtccataa 9541009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 9572973 - 9572927
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||| |||| |||| | ||||||||||||||||||||||||    
T  9572973 agactgtttgtgagaacttacgaaaataacttatgacatgtccataa 9572927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 11569424 - 11569470
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||||| |||||||||||||||| | |||||||||||| |||||    
T  11569424 agactgtttaagagagcttatggaaacagcttatgacatgtacataa 11569470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 37740405 - 37740462
Alignment:
Q  43 gagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccata 101  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||  | |||||||||    
T  37740405 gagagtttatggaaacaacttatgacatgtccat-aactattttcagcttatttccata 37740462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 40071848 - 40071806
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||| ||||||||||||||| |||||||||||||| |||||    
T  40071848 tgtttgggagagcttatggaaacaacttatgacatgttcataa 40071806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 1470944 - 1470977
Alignment:
Q  154 ttgactttattttatgttttattatagaaatagc 187  Q
    ||||||||||||||| ||||||||||||||||||    
T  1470944 ttgactttattttatcttttattatagaaatagc 1470977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 4558788 - 4558747
Alignment:
Q  146 aaaataacttgactttattttatgttttattatagaaatagc 187  Q
    ||||||| || |||||||||||| ||||||||||||||||||    
T  4558788 aaaataatttaactttattttatcttttattatagaaatagc 4558747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 29168642 - 29168687
Alignment:
Q  42 agagagcttatggaaataacttatgacatgtccataaactattttc 87  Q
    |||||||||||| ||| | |||||||||||||||||| ||||||||    
T  29168642 agagagcttatgaaaacagcttatgacatgtccataagctattttc 29168687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 29262858 - 29262907
Alignment:
Q  49 ttatggaaataacttatgacatgtccataaactattttcaaatgatttcc 98  Q
    ||||||||| |||||||||||||| ||||| |||||||||| | ||||||    
T  29262858 ttatggaaacaacttatgacatgttcataagctattttcaagtaatttcc 29262907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 25869251 - 25869279
Alignment:
Q  50 tatggaaataacttatgacatgtccataa 78  Q
    |||||||||||||||||||||||||||||    
T  25869251 tatggaaataacttatgacatgtccataa 25869279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 30600320 - 30600356
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgt 72  Q
    |||||||||||||||||||||| |||| |||||||||    
T  30600320 tgtttgagagagcttatggaaacaactcatgacatgt 30600356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 32156971 - 32157011
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgt 72  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  32156971 agactgtttgagagggtttatggaaataacttattacatgt 32157011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 27626094 - 27626174
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||| |||| || | |||||||||||| ||||| |||||    
T  27626094 tgtttgagaaagcttatggaaacagcttatgacatgtccataaactgttttaaacttatttccataagctcttcatgatag 27626174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 44808261 - 44808183
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttca 110  Q
    ||||||||||| ||| |||||| |||||||||||||||||||||||| || ||||||  | |||| ||||||| |||||    
T  44808261 agactgtttgatagaccttatgaaaataacttatgacatgtccataacctgttttcagcttattttcataagcccttca 44808183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 48157087 - 48157158
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataag 103  Q
    |||||||||| |||||||||| |||| |||||||| ||||||||||| || ||||||  | |||||||||||    
T  48157087 agactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataag 48157158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 5269578 - 5269536
Alignment:
Q  43 gagagcttatggaaataacttatgacatgtccataaactattt 85  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  5269578 gagagcttatggaaatagcttacgacatgtccataaactattt 5269536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 39542267 - 39542308
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtc 73  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  39542267 agacagttttagagagcttatggaaataacttatgacatgtc 39542308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 22387863 - 22387935
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||| ||||||||||| ||| |||||||| |||||  ||||||| |||| || | ||||||||||||    
T  22387863 agactgtttgggagagcttatgaaaacaacttatggcatgtttataaactgtttttaacttatttccataagc 22387935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 36370760 - 36370688
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||||| ||| |||||  ||||||||||||||| ||||| || | |||||||||||| ||||| |||||    
T  36370760 agagcttatgaaaaaaacttgggacatgtccataaacgatttttaatttatttccataagctcttcaggatag 36370688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 36598327 - 36598379
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||||||||||||||||||| | |||||||||||| ||||| || ||||||    
T  36598327 tgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttca 36598379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 45078370 - 45078314
Alignment:
Q  43 gagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttcca 99  Q
    |||| ||||| ||||||||||||||||||||||||| || ||||||| | |||||||    
T  45078370 gagaacttatagaaataacttatgacatgtccataagctgttttcaacttatttcca 45078314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 47427275 - 47427323
Alignment:
Q  37 gtttgagagagcttatggaaataacttatgacatgtccataaactattt 85  Q
    ||||||||||||||||||||| |||||||||||| || |||| ||||||    
T  47427275 gtttgagagagcttatggaaacaacttatgacatctctataagctattt 47427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 3500940 - 3501003
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccata 101  Q
    |||| |||||||||||||||||||||||||||||| ||| | || ||||||  | |||||||||    
T  3500940 tttgtgagagcttatggaaataacttatgacatgtacatcagctgttttcagcttatttccata 3501003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 29290420 - 29290361
Alignment:
Q  48 cttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcact 107  Q
    |||||||||| |||||||||||||||||||| || |||||||   |||||| ||||||||    
T  29290420 cttatggaaacaacttatgacatgtccataagctgttttcaacatatttccgtaagcact 29290361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 44989908 - 44989943
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaa 79  Q
    |||||||||||||||| |||||||||||||||||||    
T  44989908 agagcttatggaaatagcttatgacatgtccataaa 44989943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 36538007 - 36537965
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||||||| |||||||||| |||||||||||||| |||||    
T  36538007 tgtttgagagaacttatggaaacaacttatgacatgttcataa 36537965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 39360126 - 39360080
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||||||| |||| ||||||||| |||||||||||| |||||||    
T  39360126 agactgtttgatagagtttatggaaacaacttatgacatatccataa 39360080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 49060531 - 49060489
Alignment:
Q  145 aaaaataacttgactttattttatgttttattatagaaatagc 187  Q
    |||||||| ||||||||||||||| |||| |||||||||||||    
T  49060531 aaaaataatttgactttattttattttttgttatagaaatagc 49060489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 2013275 - 2013214
Alignment:
Q  54 gaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagata 115  Q
    |||| |||||||||| ||||||| |||| | ||||| | |||||||||| ||||||||||||    
T  2013275 gaaacaacttatgacttgtccatcaactgtcttcaatttatttccataatcacttcaagata 2013214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 12834916 - 12834985
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||||| | | |||||| |||  |||| ||||||||| | ||||||||||||||||||||| ||||||    
T  12834916 ataagcacttctgagactgattggtagagattatggaaacagcttatgacatgtccataaactgttttca 12834985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 25422429 - 25422380
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaact 81  Q
    |||||||||| ||||||||||||||| | ||||||||||||  |||||||    
T  25422429 agactgtttgggagagcttatggaaacaccttatgacatgtttataaact 25422380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 28165207 - 28165122
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||| ||| ||||| ||||||| |||||||||||| | || | ||| ||| ||||| || ||||||| | ||||||||||||    
T  28165207 ataagcacttatgagactctttgagatagcttatggaaacagctcaagacctgttcataagctgttttcaacttatttccataagc 28165122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 33645937 - 33645974
Alignment:
Q  41 gagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  33645937 gagagagcttatggaaacaacttatgacatgtctataa 33645974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 39568308 - 39568337
Alignment:
Q  49 ttatggaaataacttatgacatgtccataa 78  Q
    ||||||||||||||||||||||||||||||    
T  39568308 ttatggaaataacttatgacatgtccataa 39568337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 44687021 - 44686976
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactattttcaa 89  Q
    |||||||||||||| |||||||||||||||||| | || |||||||    
T  44687021 agagcttatggaaacaacttatgacatgtccatgagctgttttcaa 44686976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 28727730 - 28727770
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgt 72  Q
    ||||||||||||||||||||||||||   ||||||||||||    
T  28727730 agactgtttgagagagcttatggaaacggcttatgacatgt 28727770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 31149737 - 31149705
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacat 70  Q
    |||||||||||||||| ||||||||||||||||    
T  31149737 tttgagagagcttatgaaaataacttatgacat 31149705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 31168029 - 31167997
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacat 70  Q
    |||||||||||||||| ||||||||||||||||    
T  31168029 tttgagagagcttatgaaaataacttatgacat 31167997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 37273237 - 37273153
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||  | ||||||| | |||||||||||  || ||||||||    
T  37273237 agactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatag 37273153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 49465909 - 49465990
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatagatt 119  Q
    |||| |||||||||| |||| |||||||||||||||||| |||||||||||| | |||||||||| | ||| | ||||||||    
T  49465909 tttgtgagagcttatagaaacaacttatgacatgtccatgaactattttcaacttatttccataaactctttaggatagatt 49465990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 20192575 - 20192645
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||| ||||||||||||| |||| | |||||||||||||||||| || ||||||| | ||||||||||||    
T  20192575 actgtatgagagagcttatagaaacagcttatgacatgtccataagctgttttcaactcatttccataagc 20192645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 25182954 - 25183008
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactatttt 86  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||| |||||||    
T  25182954 agactgtttgagagagcttatgaaaacaacttatgacatatccataagctatttt 25183008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 52323860 - 52323928
Alignment:
Q  31 aagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttcca 99  Q
    ||||||||||| |||||||||| ||||||| |||||||| |||||||| || ||||||| | |||||||    
T  52323860 aagactgtttgtgagagcttattgaaataatttatgacacgtccataagctgttttcaacttatttcca 52323928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 24624315 - 24624257
Alignment:
Q  30 taagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    ||||||||||||  |||||||||| ||| | ||||||||||||||||||||| ||||||    
T  24624315 taagactgtttggaagagcttatgaaaacagcttatgacatgtccataaactgttttca 24624257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 1810080 - 1810036
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccat 76  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||    
T  1810080 agactatttgagagagcttacggaaacaacttatgacatgtccat 1810036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 2606278 - 2606317
Alignment:
Q  33 gactgtttgagagagcttatggaaataacttatgacatgt 72  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  2606278 gactgtttgagagatcttatggaaacaacttatgacatgt 2606317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 14598523 - 14598566
Alignment:
Q  35 ctgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||    
T  14598523 ctgtttgggggagtttatggaaataacttatgacatgtccataa 14598566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 40880915 - 40880954
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatg 71  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  40880915 agactgtttgagagagcttatgaaaacaacttatgacatg 40880954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 42817192 - 42817235
Alignment:
Q  35 ctgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  42817192 ctgtttgagagagcttatggaaacagcatatgacatgtccataa 42817235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 11039306 - 11039352
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||||||| |||||||||||||| |  |||||||||||||||||    
T  11039306 agactgtttgaaagagcttatggaaacatattatgacatgtccataa 11039352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 21574593 - 21574547
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||| ||||||||||| ||| |||||||||||||| |||||    
T  21574593 agactgtttgggagagcttatgaaaacaacttatgacatgttcataa 21574547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 31403117 - 31403075
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||    
T  31403117 tgtttgagagagcttatggaaacaacttattacatgtctataa 31403075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 36646347 - 36646405
Alignment:
Q  30 taagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    ||||||| |||| |||||||||||||||  ||||||| ||||||||||| || ||||||    
T  36646347 taagactatttgggagagcttatggaaaccacttatggcatgtccataagctgttttca 36646405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 37155104 - 37155058
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||| || |||| ||||||||||||||||| ||||||||||||    
T  37155104 agactgttcgaaagagtttatggaaataacttattacatgtccataa 37155058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 37200459 - 37200413
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||| || |||| ||||||||||||||||| ||||||||||||    
T  37200459 agactgttcgaaagagtttatggaaataacttattacatgtccataa 37200413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 49772635 - 49772681
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||  ||||||||||||||| ||||||||| ||||||||||    
T  49772635 agactgtttaggagagcttatggaaacaacttatgagatgtccataa 49772681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 1395661 - 1395620
Alignment:
Q  146 aaaataacttgactttattttatgttttattatagaaatagc 187  Q
    ||||||| ||||||||||||||| |||| |||||||||||||    
T  1395661 aaaataatttgactttattttatcttttgttatagaaatagc 1395620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 26603309 - 26603224
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||| | ||| ||||||   ||||| ||||||| |||||||||||||||||||   || |||||| | ||||||||||||    
T  26603309 ataagcacatgtgagattgtttggtggagctcatggaaacaacttatgacatgtccatattttaatttcaacttatttccataagc 26603224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 29113565 - 29113509
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    ||||||||||||||||||||  |||| ||||||| ||||| | |||| |||||||||    
T  29113565 agactgtttgagagagcttacagaaacaacttataacatgcctataagctattttca 29113509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 31010501 - 31010449
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||| || ||||||| |||| |||||||||||||||||||| || ||||||    
T  31010501 tgtttgtgaaagcttatagaaacaacttatgacatgtccataagctgttttca 31010449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 43115147 - 43115087
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||| ||||||||| ||||||||||||||||||||  | ||||||  | ||||||||||||    
T  43115147 agagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagc 43115087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 1741986 - 1742086
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatagat 118  Q
    ||||||||  || ||||| |||| ||||||||||||||| |||||||||||||| ||||| |||| ||||| | |||||||||| | ||||| |||||||    
T  1741986 ataagcacccatgagactatttgggagagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactcttcatgatagat 1742085  T
Q  119 t 119  Q
    |    
T  1742086 t 1742086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 25661210 - 25661126
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    ||||||||||  |||||||| ||||||| ||||||| |||||| |||||| |||||| || |||||||||||| ||||| |||||    
T  25661210 agactgtttggcagagcttacggaaatagcttatgaaatgtccttaaactgttttcagattatttccataagctcttcaggatag 25661126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 34652003 - 34652087
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||| ||| |||| ||||||| |||| |||||||||||||||||||| || ||||||| | |||||||||||| || ||||||||    
T  34652003 agacggttggagaaagcttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatag 34652087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 36852555 - 36852491
Alignment:
Q  52 tggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||| ||||||||||||||||| |||||||||||||| || |||||||||||| || ||||||||    
T  36852555 tggatataacttatgacatgtctataaactattttcagattatttccataagctctccaagatag 36852491  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 11344739 - 11344794
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaa 89  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||||| |||||||    
T  11344739 actgtttgacagaccttatggaaacaacttatgacatgtccataaactgttttcaa 11344794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 28803484 - 28803543
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||| | ||||||||||||||| | |||||||| ||||||||||||||||||||    
T  28803484 ataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacatgtccataa 28803543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 3973658 - 3973609
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgac 68  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  3973658 ataagcacttataagactgtttgagagagcatatggaaacaacttatgac 3973609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 4550849 - 4550796
Alignment:
Q  33 gactgtttgagagagcttatggaaataacttatgacatgtccataaactatttt 86  Q
    ||||||||| ||||||||||||||| |||||||||||||| ||||| |||||||    
T  4550849 gactgtttgggagagcttatggaaacaacttatgacatgttcataagctatttt 4550796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 10285949 - 10285892
Alignment:
Q  46 agcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataag 103  Q
    |||||||| |||||||||||||||||||||||| || ||||||| | |||||||||||    
T  10285949 agcttatgaaaataacttatgacatgtccataagctgttttcaacttatttccataag 10285892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 1494415 - 1494467
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactatttt 86  Q
    |||||||||||||||||||| ||| | ||||||||||||||||||||| ||||    
T  1494415 actgtttgagagagcttatgaaaacagcttatgacatgtccataaactgtttt 1494467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 43985310 - 43985234
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttca 110  Q
    |||||||||||||| |||  |||| |||||||||||||||||||| || ||||||| |  ||||||||||| |||||    
T  43985310 actgtttgagagagattactgaaacaacttatgacatgtccataagcttttttcaacttgtttccataagctcttca 43985234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 43456672 - 43456743
Alignment:
Q  30 taagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccata 101  Q
    ||||||||||||| ||||||| || ||| |||| |||||||||||||||||| ||||||  | |||||||||    
T  43456672 taagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgttttcagcttatttccata 43456743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 43808663 - 43808621
Alignment:
Q  30 taagactgtttgagagagcttatggaaataacttatgacatgt 72  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  43808663 taagactatttgagagagcttatgaaaataacttatgacatgt 43808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 12785973 - 12785920
Alignment:
Q  25 acatataagactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||| |||||| |||||||||||||| ||||| |||||| |||||||||||||    
T  12785973 acataaaagactatttgagagagcttacggaaacaacttacgacatgtccataa 12785920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 9478401 - 9478346
Alignment:
Q  33 gactgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    ||||||||||||||| ||||| ||| ||||||| |||||||||||| || ||||||    
T  9478401 gactgtttgagagagtttatgcaaacaacttattacatgtccataagctgttttca 9478346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 9878661 - 9878695
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||||||| ||||||||||||||||||||    
T  9878661 agagcttatggaaacaacttatgacatgtccataa 9878695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 12215896 - 12215854
Alignment:
Q  46 agcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||||||||||| |||||||||||||||||| || ||||||    
T  12215896 agcttatggaaatagcttatgacatgtccataagctgttttca 12215854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 17221519 - 17221561
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactatttt 86  Q
    |||||||||||||||| |||||||||| |||||||||| ||||    
T  17221519 agagcttatggaaatatcttatgacatatccataaactttttt 17221561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 1830144 - 1830103
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccata 77  Q
    |||||| ||||||||||||||| | |||||||||||||||||    
T  1830144 tgtttgggagagcttatggaaacatcttatgacatgtccata 1830103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 1939326 - 1939371
Alignment:
Q  59 aacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||||||||||||| || ||||||| | ||||||||||||    
T  1939326 aacttatgacatgtccataagctgttttcaacttatttccataagc 1939371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 10190382 - 10190345
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaa 56  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  10190382 ataaacacttataagactgtttgagagagcttatggaa 10190345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 15120283 - 15120246
Alignment:
Q  35 ctgtttgagagagcttatggaaataacttatgacatgt 72  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  15120283 ctgtttgggagagcttatggaaacaacttatgacatgt 15120246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 18884972 - 18884899
Alignment:
Q  30 taagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataag 103  Q
    |||| ||||||| |||||||||| |||| | |||||||||| ||||| | || |||||| || |||||||||||    
T  18884972 taaggctgtttgggagagcttatagaaacagcttatgacatttccattagctgttttcagattatttccataag 18884899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 25609786 - 25609745
Alignment:
Q  146 aaaataacttgactttattttatgttttattatagaaatagc 187  Q
    ||||||| ||||||||||||||| |||| |||||||||||||    
T  25609786 aaaataaattgactttattttatcttttcttatagaaatagc 25609745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 32821913 - 32821856
Alignment:
Q  31 aagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||||||||  |||| |||| |||| |||||||||||||||||||| || ||||||    
T  32821913 aagactgtttggaagagtttatagaaacaacttatgacatgtccataagctgttttca 32821856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 43065428 - 43065473
Alignment:
Q  43 gagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    ||||||||||| ||| ||||||||||||||||||||| | ||||||    
T  43065428 gagagcttatgaaaacaacttatgacatgtccataaattgttttca 43065473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 43205405 - 43205340
Alignment:
Q  39 ttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||||| ||||||||||| ||| ||| ||||||||  ||||| ||||||| | ||||||||||||    
T  43205405 ttgagagtgcttatggaaacaacatataacatgtccgcaaactgttttcaacttatttccataagc 43205340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 1318352 - 1318296
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtcca 75  Q
    |||||||| | | |||||||||| ||||||||||| ||| | |||||||||||||||    
T  1318352 ataagcacttgtgagactgtttgtgagagcttatgaaaacatcttatgacatgtcca 1318296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 9595349 - 9595277
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||| ||||| ||| | |||||||||||||||| |||||||||||  | |||| |||||||| || |||||||    
T  9595349 agagtttatgaaaacatcttatgacatgtccatgaactattttcagcttattttcataagcattttaagatag 9595277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 33231921 - 33231998
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaaga 113  Q
    ||||| ||||||||||||||||||  |||||||||  |||||||| || ||||||  |||||| ||||||| | ||||||    
T  33231921 actgtctgagagagcttatggaaaccacttatgac--gtccataagctgttttcagctgatttgcataagctcctcaaga 33231998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 39962268 - 39962312
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||| |||||||||| |||| || |||||||||||||||||    
T  39962268 actgtttgggagagcttatagaaacaatttatgacatgtccataa 39962312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 11297161 - 11297241
Alignment:
Q  30 taagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttca 110  Q
    ||||||||||||| |||||||||||||| |||||| |||||||| || | |||||||||  | |||| |||||||||||||    
T  11297161 taagactgtttgaaagagcttatggaaacaacttaagacatgtcaattagctattttcagcttattttcataagcacttca 11297241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 38047847 - 38047892
Alignment:
Q  33 gactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  38047847 gactgtttgggagagcttatggaaacaacttatgacatgtccataa 38047892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 37611186 - 37611266
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||||||||||||| ||| ||||| |||||||| ||||| || ||||||  | |||||||||||| || ||||||||    
T  37611186 tgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatag 37611266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 37787916 - 37787996
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||||||||||||| ||| ||||| |||||||| ||||| || ||||||  | |||||||||||| || ||||||||    
T  37787916 tgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatag 37787996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 41052967 - 41052899
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||| |||||||||| |||| ||| |||||||||| ||||||||||||| || | ||||||||||||    
T  41052967 tgtttgggagagcttatagaaacaacctatgacatgttcataaactatttttaacttatttccataagc 41052899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 32172751 - 32172700
Alignment:
Q  37 gtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    ||||| ||||||||||||||| |||||||||||||||||||| | |||||||    
T  32172751 gtttgggagagcttatggaaacaacttatgacatgtccataagccattttca 32172700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 36639638 - 36639541
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagatag 116  Q
    |||||||| ||||||||||||||||||| |||| | ||||  |||||||| |||||||||  | |||||   | |||| ||||||| |||||||||||    
T  36639638 ataagcacttataagactgtttgagagaacttacgaaaattgcttatgacgtgtccataagttgttttcctcttattttcataagctcttcaagatag 36639541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 16944944 - 16944988
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||    
T  16944944 actgtttgagagaggtcatggaaataacttatgatatgtccataa 16944988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 35095753 - 35095825
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||||||||  |||||||||||||||| |||||||||||| ||||  |  ||||||| | ||||||||||||    
T  35095753 agactgtttggaagagcttatggaaatatcttatgacatgtacatatgccgttttcaacttatttccataagc 35095825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 10152450 - 10152391
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||| | ||||| |||  ||||||||||| ||| ||||||||||||||||||||    
T  10152450 ataagcacatgtgagactattttggagagcttatgaaaacaacttatgacatgtccataa 10152391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 11457189 - 11457119
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagata 115  Q
    |||||||||||||| |||||||||||||||||||| ||  ||||| || ||||| |||||| || |||||||    
T  11457189 agagcttatggaaacaacttatgacatgtccataagct-gtttcatattatttctataagctctccaagata 11457119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 11700356 - 11700415
Alignment:
Q  43 gagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataa 102  Q
    ||||| ||||||||| |||||||||||||||||||| || |||||| || |||| |||||    
T  11700356 gagagtttatggaaacaacttatgacatgtccataagctgttttcagattattttcataa 11700415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 29590584 - 29590666
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataa 102  Q
    |||||||| ||| ||||||||||||  |||||||||| | |||||||||| |||||||||  | ||||||| | ||||||||||    
T  29590584 ataagcac-tatgagactgtttgagttagcttatggacaaaacttatgacttgtccataagttgttttcaacttatttccataa 29590666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 40499704 - 40499739
Alignment:
Q  43 gagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||||||||||| ||||||||||||||||||||    
T  40499704 gagagcttatggaaacaacttatgacatgtccataa 40499739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 13604825 - 13604899
Alignment:
Q  41 gagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagata 115  Q
    ||||||||||||| ||| | |||||||||||||||||   | ||||||| | |||| ||||||| ||||||||||    
T  13604825 gagagagcttatgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataagctcttcaagata 13604899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 14980612 - 14980566
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||||||||||||||  |||| ||||||||||||| |||||    
T  14980612 agactgtttgagagagcttataaaaatgacttatgacatgtacataa 14980566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 28586735 - 28586789
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||||| ||||||||||||||||| |||||||||| ||| ||| || ||||||    
T  28586735 actgtttgggagagcttatggaaatagcttatgacatatccgtaagctgttttca 28586789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 35960516 - 35960470
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||| |||||||||||||||||||  |||||| |||||||||||||    
T  35960516 agactatttgagagagcttatggaagcaacttacgacatgtccataa 35960470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 12242683 - 12242716
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatg 71  Q
    |||||||||||||||||||| |||||||||||||    
T  12242683 tttgagagagcttatggaaaaaacttatgacatg 12242716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 2569668 - 2569708
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||  ||||||||||||| ||||||||||||||||||    
T  2569668 tttgagattgcttatggaaatagcttatgacatgtccataa 2569708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 14364319 - 14364279
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||| |||||||||||| | ||||||||||||||||||    
T  14364319 tttgagaaagcttatggaaacagcttatgacatgtccataa 14364279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 29336733 - 29336677
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||| ||||||||||||||||||| |||||||| |||  ||||||| | ||||||    
T  29336733 agactgattgagagagcttatggaaacaacttatggcatacccataaaatgttttca 29336677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 35960396 - 35960364
Alignment:
Q  154 ttgactttattttatgttttattatagaaatag 186  Q
    ||||||||||||||| |||||||||||||||||    
T  35960396 ttgactttattttatcttttattatagaaatag 35960364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 37526166 - 37526238
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||||||||||||||| | | ||| ||||||||||  |||| || ||||||  | ||||||||||||    
T  37526166 agactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagc 37526238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 37690603 - 37690675
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||||||||||||||| | | ||| ||||||||||  |||| || ||||||  | ||||||||||||    
T  37690603 agactgtttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagc 37690675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 38867799 - 38867842
Alignment:
Q  33 gactgtttgagagagcttatggaaataacttatgacatgtccat 76  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  38867799 gactgtttgagagagcttatggaaataacttatgatatgtccat 38867842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 11560535 - 11560584
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatgtccataaactattttc 87  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  11560535 tttgatagagcttatggaaacaacttatgacatatccataaactattttc 11560584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 30259440 - 30259525
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||| ||||| |||| |||||||| ||||||||| |||| |||||| |||||||| ||||| | ||||||| | ||||||||||||    
T  30259440 ataaacacatttaaggctgtttgaaagagcttatagaaacaacttacgacatgtcaataaattgttttcaacttatttccataagc 30259525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 15579586 - 15579539
Alignment:
Q  31 aagactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||||    
T  15579586 aagactgtttgggagagcttgtggaaacaacttatgacatgtccataa 15579539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 1662676 - 1662622
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactatttt 86  Q
    ||||| |||| ||||||||| ||||| ||||||||||||||||||||| ||||||    
T  1662676 agactatttgcgagagcttacggaaacaacttatgacatgtccataaaatatttt 1662622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 4033988 - 4034029
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccata 77  Q
    |||||||||||||||||| |||||||||||||| ||||||||    
T  4033988 tgtttgagagagcttatgaaaataacttatgacttgtccata 4034029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 17631079 - 17631120
Alignment:
Q  42 agagagcttatggaaataacttatgacatgtccataaactat 83  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  17631079 agagagcttatggaaacaacttatgacatgtccataagctat 17631120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 23407534 - 23407489
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccata 77  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||||    
T  23407534 agactgtctgagagagcttattgaaatagcttatgacatgtccata 23407489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 49692019 - 49692064
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccata 77  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||    
T  49692019 agactgtttgagagaacttatgaaaatagcttatgacatgtccata 49692064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 44031977 - 44032049
Alignment:
Q  43 gagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaagata 115  Q
    ||||||||||| ||  | || ||||||||||||||| |||||||||  | |||||||||||| ||||||||||    
T  44031977 gagagcttatgtaagcagctaatgacatgtccataagctattttcagctaatttccataagctcttcaagata 44032049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 4549508 - 4549555
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaa 79  Q
    |||||||||| |||||||||| |||| ||||||||||||||| |||||    
T  4549508 agactgtttgggagagcttatagaaacaacttatgacatgtctataaa 4549555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 5591933 - 5592004
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataag 103  Q
    |||||||||||||||||||||| ||| | ||||||||| || ||||| |  ||||||| | |||||||||||    
T  5591933 agactgtttgagagagcttatgaaaacagcttatgacacgtgcataagccgttttcaatttatttccataag 5592004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 15515635 - 15515572
Alignment:
Q  41 gagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||||| ||||| ||| ||||||||||||||| |||  |||||||||| | ||||||||||||    
T  15515635 gagagagtttatgaaaacaacttatgacatgtcaatacgctattttcaatttatttccataagc 15515572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 17628689 - 17628646
Alignment:
Q  45 gagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    ||||||||||||| |||||||||||||||||||| || ||||||    
T  17628689 gagcttatggaaacaacttatgacatgtccataagctgttttca 17628646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 37941955 - 37941998
Alignment:
Q  35 ctgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||||||||||||||| |||| || |||||||||||||||||    
T  37941955 ctgtttgagagagcttatagaaacaatttatgacatgtccataa 37941998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 45234187 - 45234148
Alignment:
Q  146 aaaataacttgactttattttatgttttattatagaaata 185  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  45234187 aaaataatttgactttattttatcttttattatagaaata 45234148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 45327670 - 45327627
Alignment:
Q  45 gagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||    
T  45327670 gagcttatggaaacaacttatgacatgtccataaattgttttca 45327627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 49521776 - 49521819
Alignment:
Q  36 tgtttgagagagcttatggaaataacttatgacatgtccataaa 79  Q
    ||||||||||||||| |||||| |||||||||||||| ||||||    
T  49521776 tgtttgagagagcttgtggaaacaacttatgacatgttcataaa 49521819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 28467546 - 28467496
Alignment:
Q  22 agcacatataagactgtttgagagagcttatggaaataacttatgacatgt 72  Q
    ||||| ||| ||||| |||| ||||| ||||||||||||||||||||||||    
T  28467546 agcacttatgagactatttgggagagattatggaaataacttatgacatgt 28467496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 29723587 - 29723517
Alignment:
Q  37 gtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcact 107  Q
    |||||| ||| || ||||||| | ||||||||||||||||||||| ||||||| | |||| ||||| ||||    
T  29723587 gtttgaaagaactaatggaaacagcttatgacatgtccataaactgttttcaacttatttacataaccact 29723517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 37811953 - 37811887
Alignment:
Q  34 actgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccat 100  Q
    |||| |||||||| |||||| ||| | |||||||||||| |||||||| ||||||| | ||||||||    
T  37811953 actggttgagagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccat 37811887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 44422802 - 44422756
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    ||||||| || ||||||||||| ||||| ||||||||||||||||||    
T  44422802 agactgtctgggagagcttatgaaaatagcttatgacatgtccataa 44422756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 16980906 - 16980857
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaact 81  Q
    ||||| |||||||||||||||||||| |||||| ||||| | ||||||||    
T  16980906 agactatttgagagagcttatggaaacaacttacgacattttcataaact 16980857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 27145634 - 27145589
Alignment:
Q  43 gagagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    ||||||||||||||| | ||||||||||||||||||  ||||||||    
T  27145634 gagagcttatggaaaaagcttatgacatgtccataagttattttca 27145589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 50319282 - 50319241
Alignment:
Q  146 aaaataacttgactttattttatgttttattatagaaatagc 187  Q
    |||| |||||||||||||||||| |||| |||||||||||||    
T  50319282 aaaacaacttgactttattttatcttttgttatagaaatagc 50319241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 4868502 - 4868431
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    |||||||||||||||| ||||| ||| ||||||||||||||| ||||  | ||||||| | |||| |||||||    
T  4868502 agactgtttgagagagtttatg-aaacaacttatgacatgtcaataagttgttttcaacttatttacataagc 4868431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 6262111 - 6262051
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagc 104  Q
    ||||||||||  || |||||||||||||| ||||| |||||||||| | ||||||| ||||    
T  6262111 agagcttatgagaacaacttatgacatgttcataagctattttcaacttatttccacaagc 6262051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 6262835 - 6262795
Alignment:
Q  38 tttgagagagcttatggaaataacttatgacatgtccataa 78  Q
    |||| ||||||||||| ||||||||||||| ||||||||||    
T  6262835 tttgggagagcttatgaaaataacttatgatatgtccataa 6262795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 14737679 - 14737747
Alignment:
Q  18 aataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtccataaactatttt 86  Q
    ||||||||| | | |||||||||| || | ||| || ||||||||||| |||||||||||| |||||||    
T  14737679 aataagcacttgtgagactgtttgggaaaacttgtgaaaataacttataacatgtccataagctatttt 14737747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 17420294 - 17420238
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccat 100  Q
    |||||||||| ||| ||||||| ||||||||||||| | ||||||| | ||||||||    
T  17420294 agagcttatgaaaacaacttattacatgtccataaattgttttcaacttatttccat 17420238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 19412574 - 19412610
Alignment:
Q  42 agagagcttatggaaataacttatgacatgtccataa 78  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  19412574 agagagtttatggaaacaacttatgacatgtccataa 19412610  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 23373267 - 23373323
Alignment:
Q  19 ataagcacatataagactgtttgagagagcttatggaaataacttatgacatgtcca 75  Q
    |||||||| | | ||| |||||| |||||||||| |||| |||||||||||||||||    
T  23373267 ataagcacttgtgagattgtttgggagagcttatagaaacaacttatgacatgtcca 23373323  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 27146012 - 27145968
Alignment:
Q  44 agagcttatggaaataacttatgacatgtccataaactattttca 88  Q
    |||||||||||||| | ||||||||||||||||||  ||||||||    
T  27146012 agagcttatggaaacagcttatgacatgtccataagttattttca 27145968  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 43771933 - 43771885
Alignment:
Q  39 ttgagagagcttatggaaataacttatgacatgtccataaactattttc 87  Q
    ||||||||||| ||||||| || ||||||||||||| |||||| |||||    
T  43771933 ttgagagagctcatggaaacaatttatgacatgtccgtaaactgttttc 43771885  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 27679 - 27640
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatg 71  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  27679 agactgtttgggagagcttatggaaatagcttatgacatg 27640  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 38678 - 38649
Alignment:
Q  49 ttatggaaataacttatgacatgtccataa 78  Q
    ||||||||||||||||||||||||||||||    
T  38678 ttatggaaataacttatgacatgtccataa 38649  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 10584 - 10664
Alignment:
Q  32 agactgtttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttcaag 112  Q
    ||||||||||| | |||||||| ||| |||| |||||||||||||||  | ||||||  | |||||||||| |||| ||||    
T  10584 agactgtttgacaaagcttatgtaaacaactaatgacatgtccataagttgttttcagcttatttccataaacactacaag 10664  T

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