View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_6 (Length: 450)
Name: NF5448_low_6
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 5 - 434
Target Start/End: Original strand, 46343925 - 46344354
Alignment:
| Q |
5 |
agtgagatgaaagtcgattgatatagttgacagcaataagtttatgttaggactctatttgacaaaatcactaattaccagagattttacaaaaattaca |
104 |
Q |
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| T |
46343925 |
agtgacatgaaagtcgattgatatagttgacaacaataagtttatgttaggactctatttgacaaaatcactaattaccagagattttacaaaaattaca |
46344024 |
T |
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| Q |
105 |
ctttgaagctttaacaaaatagtctaccacaattcaaaacatgcatttagaatatgtagggttagaacttagaacctagaaggattcaactacatcactt |
204 |
Q |
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| T |
46344025 |
ctttgaagctttaacaaaatagtctaccacaattcaaaacatgcatttagaatatgtagggttagaacttagaacctagaaggattcaactacatcactt |
46344124 |
T |
|
| Q |
205 |
ttttctgatttagtaacttcatccaagattcattgttattgaaaaagttgagttgtgaagagtctggatattgatagtgccctacttctcttcaaattgt |
304 |
Q |
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| T |
46344125 |
ttttctgatttagtaacttcatccaagattcattgttattgaaaaagttgagttgtgaagagtctggatattgatagtgccctacttctcttcaaattgt |
46344224 |
T |
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| Q |
305 |
attatcatgataacggaaataagtacctcaacataatttccatttctttctagtttacattaatgtttcactgcgtctaggcaattatggtttcttaaaa |
404 |
Q |
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| T |
46344225 |
attatcatgataacggaaataagtacctcaacataatttccatttctttctagtttacattaatgtttcactgcgtctaggcaattatggtttcttaaaa |
46344324 |
T |
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| Q |
405 |
ttgcatttatcttcgattttcacaaggaaa |
434 |
Q |
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| T |
46344325 |
ttgcatttatcttcgattttcacaaggaaa |
46344354 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 2816990 - 2817048
Alignment:
| Q |
376 |
tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaa |
434 |
Q |
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| T |
2816990 |
tgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaaaggaaa |
2817048 |
T |
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