View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_7 (Length: 416)
Name: NF5448_low_7
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 59 - 392
Target Start/End: Complemental strand, 24809540 - 24809207
Alignment:
| Q |
59 |
ataatttgagaaaaccacgtaatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaaggaagataggatgtcc |
158 |
Q |
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| T |
24809540 |
ataatttgaaaaaaccacgtaatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaaggaagataggatgtcc |
24809441 |
T |
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| Q |
159 |
ttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaagagacatgataataatcaaagaaactgaaacatatgtcaccatgttcatc |
258 |
Q |
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| T |
24809440 |
ttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaagagacatgataataatcaaagaaactgaaacatatgtcaccatgttcatc |
24809341 |
T |
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| Q |
259 |
tcaactannnnnnnagtcactgttgttttctctgactacatgtttttgctgagatactctctcagttgttgtccacaacaattatgtatgtgtttcagag |
358 |
Q |
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| T |
24809340 |
tcaactatttttttagtcactgttgttttctctgactacatgtttttgctgagatactctctcagttgttgtccacaacaattatgtatgtgtttcagag |
24809241 |
T |
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| Q |
359 |
tttatattatgttttcatgtatacatataattac |
392 |
Q |
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| T |
24809240 |
tttatattatgttttcatgtatacatataattac |
24809207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 29946405 - 29946339
Alignment:
| Q |
78 |
taatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaagg |
144 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
29946405 |
taatatatcaaatttgatcctacctaacatgtttaaatgatatacagcagacggaaataaatgaagg |
29946339 |
T |
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