View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5448_low_8 (Length: 392)
Name: NF5448_low_8
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5448_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 15812438 - 15812075
Alignment:
| Q |
17 |
cacacaaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggataattctgttgatgaagaaaccttaactatt |
116 |
Q |
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| T |
15812438 |
cacacaaccagcatattccattggcagaaagtcgaagaatgaagatcaaagttcaaaaaattctaaggataattctgttgatgaagaaaccctaactatt |
15812339 |
T |
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| Q |
117 |
gtttcacctagatagttgacaatatcgttcactttatagaagatttgaaaatatgtttggactcctttagaaaaagtttgaatccaaaaaagaaacaaac |
216 |
Q |
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| T |
15812338 |
gtttcacctagatagttgacaatatcgttcactttatagaagattcgaaaatatgtttggactc---aagaaaaagtttgaatccaaaaaagaaacaaac |
15812242 |
T |
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| Q |
217 |
attttaaaggtccaaaggatatattcatattgactactaacaaactttgaggttatgattatccaattccagcacatcttaatttggatcgctatttgta |
316 |
Q |
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| T |
15812241 |
attttaaaggtccaaaggatatattcatattgactactaacaaac-ttgaggttatgattatccaattccagcacatcttaatttggatcgctatttgta |
15812143 |
T |
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| Q |
317 |
gatttaattcatgtttgtatccgttaattattttttcattcgtattttgttcagagttaagtataatc |
384 |
Q |
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| T |
15812142 |
gatttaattcatgtttgtatccgttaattattttttcattcgtagtttgttcagagttaagtagaatc |
15812075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 15799034 - 15798908
Alignment:
| Q |
21 |
caaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggataattctgttgatgaagaaaccttaactattgttt |
120 |
Q |
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| T |
15799034 |
caaccagcattttcagttggcagaaagtccaagaatgaagatcaaatttcaaaaaattctaaggataattctgttgatgaagaaaccataactattgttt |
15798935 |
T |
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| Q |
121 |
cacctagatagttgacaatatcgttca |
147 |
Q |
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| T |
15798934 |
cacctagatagttgacattatggttca |
15798908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 15804648 - 15804537
Alignment:
| Q |
21 |
caaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggataattctgttgatgaagaaaccttaactattgttt |
120 |
Q |
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|||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
15804648 |
caaccagcattttcagttggtagaaaacccaagaatgaagatcaaagttcaaaaaattataaggataattctgttgatgaagaaactataactattgttt |
15804549 |
T |
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| Q |
121 |
cacctagatagt |
132 |
Q |
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| T |
15804548 |
cacctagatagt |
15804537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 15763616 - 15763502
Alignment:
| Q |
21 |
caaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggata---attctgttgatgaagaaaccttaactattg |
117 |
Q |
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|||||||||| ||| |||| |||| |||||||||||| ||||||| |||||||| ||| ||||||| |||| |||||||||| ||| ||||||||| |
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| T |
15763616 |
caaccagcattttcagttgggagaatgtccaagaatgatgatcaaacttcaaaaacttccaaggataattattcggttgatgaagtaactctaactattg |
15763517 |
T |
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| Q |
118 |
tttcacctagatagt |
132 |
Q |
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| T |
15763516 |
tttcacctagatagt |
15763502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 15763178 - 15763097
Alignment:
| Q |
243 |
atattgactactaacaaactttgaggttatgattatccaattccagcacatcttaatttggatcgctatttgtagatttaatt |
325 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| | ||||||| |||||||| |
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| T |
15763178 |
atattgactactaacaaactt-gaagttatgattatccaattccactacatcttaatttggattgtaatttgtatatttaatt |
15763097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 15696430 - 15696366
Alignment:
| Q |
71 |
aaaaaattctaaggataattctgttgatgaagaaaccttaactattgtttcacctagatagttga |
135 |
Q |
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||||| || ||||||||||| ||||||||||| | || ||||||||||||| ||||||||||||| |
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| T |
15696430 |
aaaaagttataaggataattatgttgatgaagtacccataactattgtttcgcctagatagttga |
15696366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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