View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5448_low_9 (Length: 384)

Name: NF5448_low_9
Description: NF5448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5448_low_9
NF5448_low_9
[»] chr5 (4 HSPs)
chr5 (29-327)||(7633222-7633520)
chr5 (5-119)||(7634041-7634155)
chr5 (4-51)||(29303603-29303650)
chr5 (56-117)||(8688104-8688165)
[»] chr6 (5 HSPs)
chr6 (1-116)||(1860283-1860398)
chr6 (1-52)||(30746535-30746586)
chr6 (1-51)||(31778799-31778849)
chr6 (3-120)||(5741488-5741605)
chr6 (1-43)||(31779508-31779550)
[»] chr1 (5 HSPs)
chr1 (1-52)||(44527932-44527983)
chr1 (1-54)||(24313799-24313852)
chr1 (29-119)||(28485811-28485901)
chr1 (56-117)||(39222590-39222651)
chr1 (29-117)||(46090135-46090223)
[»] chr4 (9 HSPs)
chr4 (1-51)||(26251450-26251500)
chr4 (1-52)||(34981472-34981523)
chr4 (3-54)||(34981950-34982001)
chr4 (37-117)||(23266767-23266847)
chr4 (5-48)||(40361269-40361312)
chr4 (40-120)||(20394174-20394254)
chr4 (29-116)||(156038-156125)
chr4 (29-94)||(11660781-11660846)
chr4 (29-69)||(32310466-32310506)
[»] chr7 (6 HSPs)
chr7 (2-54)||(42629236-42629288)
chr7 (1-68)||(31882924-31882991)
chr7 (7-54)||(35595301-35595348)
chr7 (9-52)||(36653770-36653813)
chr7 (32-117)||(47441554-47441639)
chr7 (43-123)||(18236713-18236793)
[»] chr3 (5 HSPs)
chr3 (2-52)||(39708298-39708348)
chr3 (29-112)||(51170929-51171011)
chr3 (29-118)||(7789968-7790057)
chr3 (37-117)||(25227358-25227438)
chr3 (29-118)||(25226739-25226828)
[»] chr2 (5 HSPs)
chr2 (1-51)||(19004778-19004828)
chr2 (1-51)||(19004938-19004988)
chr2 (4-48)||(35049524-35049568)
chr2 (3-51)||(44158268-44158316)
chr2 (29-66)||(1190858-1190895)
[»] scaffold0012 (1 HSPs)
scaffold0012 (29-110)||(36289-36370)
[»] scaffold0007 (2 HSPs)
scaffold0007 (3-48)||(186921-186966)
scaffold0007 (2-51)||(187430-187479)
[»] chr8 (3 HSPs)
chr8 (3-52)||(17944861-17944910)
chr8 (56-118)||(43693703-43693765)
chr8 (70-118)||(7130034-7130082)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 327
Target Start/End: Complemental strand, 7633520 - 7633222
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattcttaaaaggaat 128  Q
    |||||||||||||||||||||||| ||||||  |||||||  ||| || |||||| |||||||||||| |||| ||||||| |||||||||||||||||     
T  7633520 tttacacatgcgttagttaactaacgtaaggggatttttgctatggctgcaggacacgagtgaaaaatgcaggatgaagagtaaaattcttaaaaggaaa 7633421  T
Q  129 cg-ggctttgtaagatgtcgcccacgatgctaagttatggttgtccaaagtaattttgtacaatgctaagtcatacccccatactctcactcggttttac 227  Q
    |  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  7633420 ccaggctttgtaagatgtcgcccaagatgctaagttatg-ttgtccaaagtaattttatacaatgctaagtcatacccccatactctcactcagttttac 7633322  T
Q  228 caaattatctcaacttcttcaccttatacatctcaagtttcatagaattaaataatttttcccccattaattttttcatcattaatttgaaataagaatg 327  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7633321 caaattatctcaacttcttcaccttatatatctcaagtttcatataattaaataatttttccccaattaattttttcatcattaatttgaaataagaatg 7633222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 7634041 - 7634155
Alignment:
Q  5 tgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtg 104  Q
    ||||||||||||| | || ||| ||||||||||||||||||||||||| |||||| |||||||| |||| || |||| ||||||||||||   |||||||    
T  7634041 tgtgtaaaattaacttatgtttaatttacacatgcgttagttaactaacgtaagggcatttttgacatggctgcagggcgcgagtgaaaagagcagggtg 7634140  T
Q  105 aagagcaaaattctt 119  Q
    ||||||| |||||||    
T  7634141 aagagcataattctt 7634155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 29303603 - 29303650
Alignment:
Q  4 atgtgtaaaattaagtcatatttgatttacacatgcgttagttaacta 51  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||    
T  29303603 atgtgtaaaattaagtaatgtttgatttacacatgcgttagttaacta 29303650  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 8688165 - 8688104
Alignment:
Q  56 aaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattc 117  Q
    ||||||||||||| |||| || |||||||||||  |||  |||||||||||||||| |||||    
T  8688165 aaggacatttttgacatggctccaggacgcgagcaaaatgtacagggtgaagagcagaattc 8688104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1860398 - 1860283
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacag 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| |||  || ||||  ||||||||||| | |||    
T  1860398 cgcatgtgtaaaattaagtcatgtttgatttacacatgcgttagttaactaacgtaagggcatttttgacattgctgcagggtgcgagtgaaaagtgcag 1860299  T
Q  101 ggtgaagagcaaaatt 116  Q
    ||||||||||||||||    
T  1860298 ggtgaagagcaaaatt 1860283  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30746535 - 30746586
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaa 52  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  30746535 cgcatgtgtaaaattaagtcatgtttgatttacacgtgcgttagttaactaa 30746586  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31778849 - 31778799
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaacta 51  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  31778849 cgcatgtgtaaaattaagtcacgtttgatttacacatgcgttagttaacta 31778799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 5741488 - 5741605
Alignment:
Q  3 catgtgtaa-aattaagtcatatttgatttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagg 101  Q
    ||||||||| |||||||||| ||||  ||||||| |||||||||||||||| | | |   ||||| | |||| || |||| |||||| ||||| | ||||    
T  5741488 catgtgtaataattaagtca-attttttttacacttgcgttagttaactaacgcaggtgtattttggtcatggctgcagggcgcgagcgaaaagtgcagg 5741586  T
Q  102 gtgaagagcaaaattctta 120  Q
    |||||||||| ||||||||    
T  5741587 gtgaagagcagaattctta 5741605  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31779508 - 31779550
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgtta 43  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||    
T  31779508 cgcatgtgtaaaattaaatcatgtttaatttacacatgcgtta 31779550  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44527983 - 44527932
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaa 52  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44527983 cgcatgtgtaaaattaagtcatgtttgatttacacatgcgttagttaactaa 44527932  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24313852 - 24313799
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaatg 54  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  24313852 cgcatgtgtaaaattaagtcacgtttgatttacacatgcgttagttaactaatg 24313799  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 28485901 - 28485811
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattctt 119  Q
    ||||||| ||| |||||||||||| |||||  ||||||||| ||| || |||| |||||| ||||| | ||||| |||||||| |||||||    
T  28485901 tttacacttgcattagttaactaacgtaagagcatttttgggatggctgcaggtcgcgagcgaaaagtgcagggggaagagcagaattctt 28485811  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 39222651 - 39222590
Alignment:
Q  56 aaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattc 117  Q
    |||||||||||||||||| || |||| ||||||  |||  | ||||||||||||||||||||    
T  39222651 aaggacatttttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagcaaaattc 39222590  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 46090223 - 46090135
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattc 117  Q
    ||||||| || ||||||||| |||  |||||| |||||||| ||| || ||||||||||| ||||| | ||||  |||||||| |||||    
T  46090223 tttacacttgtgttagttaattaacataaggatatttttgggatggctgcaggacgcgagcgaaaagtgcaggaggaagagcagaattc 46090135  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26251500 - 26251450
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaacta 51  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26251500 cgcatgtgtaaaattaagtcatgtttgatttacacatgcgttagttaacta 26251450  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34981523 - 34981472
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaa 52  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  34981523 cgcatatgtaaaattaagtcatgtttgatttacacatgcgttagttaactaa 34981472  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 34981950 - 34982001
Alignment:
Q  3 catgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaatg 54  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  34981950 catgtgtaaaattaagtcatgtttgatttacacatacgttagttaactaatg 34982001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 23266767 - 23266847
Alignment:
Q  37 tgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattc 117  Q
    |||||||||||| ||| |||||||||||||| | ||| || |||| |||||| ||||||| ||||| ||||||||||||||    
T  23266767 tgcgttagttaagtaacgtaaggacatttttaggatggctgcagggcgcgagcgaaaaatgcagggggaagagcaaaattc 23266847  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 40361312 - 40361269
Alignment:
Q  5 tgtgtaaaattaagtcatatttgatttacacatgcgttagttaa 48  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  40361312 tgtgtaaaattaagtcatgtttgatttacacatgcgttagttaa 40361269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 20394174 - 20394254
Alignment:
Q  40 gttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattctta 120  Q
    ||||||||| ||| |||||| ||||||||  ||| || |||| |||||| ||||| | ||||| |||||||||||||||||    
T  20394174 gttagttaagtaacgtaagggcatttttgagatggctgcagggcgcgagcgaaaagtgcagggggaagagcaaaattctta 20394254  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 156125 - 156038
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaatt 116  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||| || |||| ||||||  |||  || ||||||||||||| ||||    
T  156125 tttacacttgcgttagttaactaacgtaaggatatatttggaatggctgcagggcgcgagcaaaatgtatagggtgaagagcataatt 156038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 11660846 - 11660781
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaa 94  Q
    ||||||| |||||||||||||||| | ||||| |||||||| ||| || |||  ||||||||||||    
T  11660846 tttacacttgcgttagttaactaacgcaaggatatttttgggatggctgcagagcgcgagtgaaaa 11660781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 32310466 - 32310506
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttttgg 69  Q
    ||||||| |||||||||||||||| |||||| |||||||||    
T  32310466 tttacacttgcgttagttaactaacgtaagggcatttttgg 32310506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 42629236 - 42629288
Alignment:
Q  2 gcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaatg 54  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  42629236 gcatgtgtaaaattaagtcatgtatgatttacacatgcgttagttaactaatg 42629288  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 31882924 - 31882991
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaatgtaaggacatttttg 68  Q
    |||||||||||||||||| ||| |||  ||||||||||||||||||||||| || | | |||||||||    
T  31882924 cgcatgtgtaaaattaagacatgtttattttacacatgcgttagttaactagtgcaggaacatttttg 31882991  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 35595301 - 35595348
Alignment:
Q  7 tgtaaaattaagtcatatttgatttacacatgcgttagttaactaatg 54  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  35595301 tgtaaaattaaatcatatttgttttacacttgcgttagttaactaatg 35595348  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 36653770 - 36653813
Alignment:
Q  9 taaaattaagtcatatttgatttacacatgcgttagttaactaa 52  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  36653770 taaaattaagtcacgtttgatttacacatgcgttagttaactaa 36653813  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 47441639 - 47441554
Alignment:
Q  32 acacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattc 117  Q
    |||| ||||||| |||||||| | |  | ||||||||||| | ||||||||||||||  |||| | |||||||||||||| |||||    
T  47441639 acacttgcgttacttaactaacgcagaggcatttttggcaaggctacaggacgcgagcaaaaagtgcagggtgaagagcataattc 47441554  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 18236793 - 18236713
Alignment:
Q  43 agttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattcttaaaa 123  Q
    |||||||||  | |||||||||||| ||||||| ||||| ||||||  ||| || |||| ||||||||| |||||| ||||    
T  18236793 agttaactagcgcaaggacatttttagcatgacgacagggcgcgagcaaaatatgcaggatgaagagcagaattctaaaaa 18236713  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 39708298 - 39708348
Alignment:
Q  2 gcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaa 52  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  39708298 gcatgtataaaattaagtcacatttgatttacacatgcgttagttaactaa 39708348  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 51171011 - 51170929
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaa 112  Q
    ||||||| ||| |||||||||||| | | |||||||||||| |||||| |||| |||||||||||||| | |||||||||||||    
T  51171011 tttacacttgcattagttaactaacgcatggacatttttgggatgactgcagg-cgcgagtgaaaaatgctgggtgaagagcaa 51170929  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 7789968 - 7790057
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattct 118  Q
    ||||||| |||||||||||||||| |||||| ||||||||| ||| || ||||||||||  ||||| | || || |||||| ||||||||    
T  7789968 tttacacctgcgttagttaactaacgtaagggcatttttgggatggctgcaggacgcgaacgaaaagtgcatggagaagagtaaaattct 7790057  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 25227358 - 25227438
Alignment:
Q  37 tgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattc 117  Q
    |||||||||||| ||| ||||||| |||||| | ||| || ||||||||||| ||||| | ||||| |||||||| |||||    
T  25227358 tgcgttagttaagtaacgtaaggatatttttaggatggctgcaggacgcgagcgaaaagtgcagggggaagagcagaattc 25227438  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 25226828 - 25226739
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattct 118  Q
    ||||||| |||||||||||||||| ||||| ||||||| || ||| || |||| || ||| || || | ||||| |||||||| ||||||    
T  25226828 tttacacttgcgttagttaactaacgtaagaacattttcgggatggctgcagggcgtgagcgacaagtgcagggggaagagcataattct 25226739  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19004828 - 19004778
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaacta 51  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  19004828 cgcatgtgtaaaattaagtcatgtttgatttacacttgcgttagttaacta 19004778  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19004938 - 19004988
Alignment:
Q  1 cgcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaacta 51  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||||||    
T  19004938 cgcatgtgtaaaattaagtcaagtttgatttacacttgcgttagttaacta 19004988  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 35049568 - 35049524
Alignment:
Q  4 atgtgtaaaattaagtcatatttgatttacacatgcgttagttaa 48  Q
    |||||||||||||| |||  |||||||||||||||||||||||||    
T  35049568 atgtgtaaaattaaatcacgtttgatttacacatgcgttagttaa 35049524  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 44158316 - 44158268
Alignment:
Q  3 catgtgtaaaattaagtcatatttgatttacacatgcgttagttaacta 51  Q
    ||||||||||||||| |||  ||||||||||||||| ||||||||||||    
T  44158316 catgtgtaaaattaattcacgtttgatttacacatgtgttagttaacta 44158268  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 1190895 - 1190858
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttt 66  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  1190895 tttacacatgcgttagttaactaatgtagggatatttt 1190858  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 36289 - 36370
Alignment:
Q  29 tttacacatgcgttagttaactaatgtaaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagc 110  Q
    ||||||| |||||||||||||||| | |||| ||||||||| ||| || ||||||||||||||||| | | |||||||||||    
T  36289 tttacacttgcgttagttaactaacgcaagggcatttttgggatggctgcaggacgcgagtgaaaagtgctgggtgaagagc 36370  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 186966 - 186921
Alignment:
Q  3 catgtgtaaaattaagtcatatttgatttacacatgcgttagttaa 48  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||    
T  186966 catgtgtaaaattaagtcatgtttgatttacacatacgttagttaa 186921  T

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Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 187430 - 187479
Alignment:
Q  2 gcatgtgtaaaattaagtcatatttgatttacacatgcgttagttaacta 51  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  187430 gcatgtgtaaaataaaatcatgtttgatttacacatgcgttagttaacta 187479  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 17944861 - 17944910
Alignment:
Q  3 catgtgtaaaattaagtcatatttgatttacacatgcgttagttaactaa 52  Q
    |||||||||||||||||||  |||| |||||||||| |||||||||||||    
T  17944861 catgtgtaaaattaagtcacgtttgttttacacatgtgttagttaactaa 17944910  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 43693703 - 43693765
Alignment:
Q  56 aaggacatttttggcatgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattct 118  Q
    |||||||||||||||||| || |||| ||||||  |||  | |||||||||||||||||||||    
T  43693703 aaggacatttttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagcaaaattct 43693765  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 7130082 - 7130034
Alignment:
Q  70 catgactacaggacgcgagtgaaaaatacagggtgaagagcaaaattct 118  Q
    ||||||| ||||||||||| ||||||| |||||| ||||||| ||||||    
T  7130082 catgactgcaggacgcgagcgaaaaatgcagggtaaagagcagaattct 7130034  T

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