View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5449-Insertion-3 (Length: 280)
Name: NF5449-Insertion-3
Description: NF5449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5449-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 86 - 278
Target Start/End: Complemental strand, 12761511 - 12761319
Alignment:
| Q |
86 |
agtatagaaaatcatgttacctttaatggttggcaattttggttgacagtaatgaccagtggcaacaaccactgcatcaaaaacctcttctacaacctta |
185 |
Q |
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| T |
12761511 |
agtatagaaaatcatgttacctttaatggatggcaattttggttgacagtaatgaccagtggcaacaaccactgcatcaaaaacctcttccacaacctta |
12761412 |
T |
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| Q |
186 |
tcagaattcttctctttgcttctaacaatccacttcaaattatttccacaaacaccatgatcgtcaagcattccgacataattaaccctagta |
278 |
Q |
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| T |
12761411 |
tcagaattcttctctttgcttctaacaatccacttcaaattatttccacaaacaccataatcatcaagcattccaacataattaaccctagta |
12761319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 17796428 - 17796376
Alignment:
| Q |
9 |
aaagttgtaaaatcctagattttagaatttaagtcgg-attttgacaataatg |
60 |
Q |
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| T |
17796428 |
aaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaatg |
17796376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 19104868 - 19104816
Alignment:
| Q |
9 |
aaagttgtaaaatcctagattttagaatttaagtcgg-attttgacaataatg |
60 |
Q |
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| T |
19104868 |
aaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaatg |
19104816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 29067337 - 29067281
Alignment:
| Q |
7 |
agaaagttgtaaaatcctagattttagaatttaagtc-ggattttgacaataatgga |
62 |
Q |
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| T |
29067337 |
agaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaatgga |
29067281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 13100244 - 13100189
Alignment:
| Q |
7 |
agaaagttgtaaaatcctagattttagaatttaag-tcggattttgacaataatgg |
61 |
Q |
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| T |
13100244 |
agaaagtcgtaaaatcctcgattttagaatttaagttgggattttgacaataatgg |
13100189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 31424216 - 31424162
Alignment:
| Q |
7 |
agaaagttgtaaaatcctagattttagaatttaagtc-ggattttgacaataatg |
60 |
Q |
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| T |
31424216 |
agaaagtcgtaaaatcctgaattttagaatttaagtcaggattttgacaataatg |
31424162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 30432472 - 30432418
Alignment:
| Q |
7 |
agaaagttgtaaaatcctagattttagaatttaagtc-ggattttgacaataatg |
60 |
Q |
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| T |
30432472 |
agaaagtcgaaaaatcctagattttagaatttaaatcaggattttgacaacaatg |
30432418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 31238053 - 31238107
Alignment:
| Q |
7 |
agaaagttgtaaaatcctagattttagaatttaagtc-ggattttgacaataatg |
60 |
Q |
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| T |
31238053 |
agaaagtggcaaaatcctagattttaggatttaagtcgggattttgacaacaatg |
31238107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 29660936 - 29660903
Alignment:
| Q |
17 |
aaaatcctagattttagaatttaagtcggatttt |
50 |
Q |
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| T |
29660936 |
aaaatcctagattttaggatttaagtcggatttt |
29660903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 1404826 - 1404782
Alignment:
| Q |
17 |
aaaatcctagattttagaatttaagtc-ggattttgacaataatg |
60 |
Q |
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||||||||| ||||||||||||||||| |||||||||||| |||| |
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| T |
1404826 |
aaaatcctaaattttagaatttaagtcgggattttgacaacaatg |
1404782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 38158330 - 38158379
Alignment:
| Q |
7 |
agaaagttgtaaaatcctagattttagaatttaagtcgg-attttgacaa |
55 |
Q |
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| T |
38158330 |
agaaagtcgcaaaatcctagattttaggatttaagtcggaattttgacaa |
38158379 |
T |
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