View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5449_high_3 (Length: 295)
Name: NF5449_high_3
Description: NF5449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5449_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 35410075 - 35410318
Alignment:
| Q |
1 |
tggctgagtggcatctggaaccgccaaacctctgnnnnnnnngaaagaataaatagttagatcttatcttcttcacttagtgaaagaacaaatgaaagaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35410075 |
tggccgagtggcatctggaaccgccaaacctctgaaaaaaa-gaaagaataaatagttagatcttatcttcttcacttagtgaaagaacaaatgaaagaa |
35410173 |
T |
|
| Q |
101 |
caagtaaaaccaagctcattgcacagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggcaggaagaccttccatgtcaaatcgc |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35410174 |
caagtaaaaccaagctcattgagcagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggcaggaagaccttccatgtcaaaccgc |
35410273 |
T |
|
| Q |
201 |
caccaatctttataggcagcacacgtaatttgcatacagtatctc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35410274 |
caccaatctttataggcagcacacgtaatttgcatacagtatctc |
35410318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University