View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5449_high_5 (Length: 262)
Name: NF5449_high_5
Description: NF5449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5449_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 23407957 - 23408206
Alignment:
| Q |
1 |
aaccactcaaacaagatatcatacttgaacgatgaaaatagcaggctcgtattcaaatacgagaagttgggtatgttttgttttatatgtggttttattg |
100 |
Q |
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| T |
23407957 |
aaccactcaaacaagatatcatacttgaacgatgaaaatagcaggctcgtattcaaatacgagaagttgggtatgttttgttttatatgtggttttattg |
23408056 |
T |
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| Q |
101 |
gacatacatataatttttgccacaaaaaatatgaaaaagattttgttaatggtgaaaaaaggtgagggccttatctccggaaggagaacaattcctccat |
200 |
Q |
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| T |
23408057 |
gacatacatataatttttgccgcaaaaaatatgaaaaagattttgttaatggtgaaaaaaggtgagggccttatctccgggaggagaacaattcctccat |
23408156 |
T |
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| Q |
201 |
tggtggtaaattgggtagcaagtggttgattcggggtcagaatatagaat |
250 |
Q |
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| T |
23408157 |
tgatggtaaattgggtagcaagtggttgattcggggtcagaatacagaat |
23408206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 23408604 - 23408451
Alignment:
| Q |
44 |
ggctcgtattcaaatacgagaagttgggtatgttttgttttatatgtggttttattggacatacatataatttttgccacaaaaaatatgaaaaagattt |
143 |
Q |
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| T |
23408604 |
ggctggtattcaaatacgagaaattagataagttttgttttgtatgtggttctattggacatagagaatttttttgcaacaaaaaatatttgaaagattt |
23408505 |
T |
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| Q |
144 |
tgttaatggtgaaaaaaggtgagggccttatctccggaaggagaacaattcctc |
197 |
Q |
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| T |
23408504 |
ttctaatggagaaaaaaggtggttgccttaactccggaatgagaacaattcctc |
23408451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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