View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5449_low_1 (Length: 387)
Name: NF5449_low_1
Description: NF5449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5449_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 34 - 382
Target Start/End: Complemental strand, 17232957 - 17232609
Alignment:
| Q |
34 |
aacattttctagctctcaattattgaattgaacattattattatgatatatctcaagctattaagttgttattcgtaatcttatgatttgatataattca |
133 |
Q |
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| T |
17232957 |
aacattttctagctctcaattattgaattgaacattattattatgatatatctcaagctattaagttgttattcgtaatcttatgatttgatataattca |
17232858 |
T |
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| Q |
134 |
ctgtttcaaaaacatggttccaattttcaatttgattaaatatttttgtacaggcatttttcaacctaagggcatcgctgtgcctgatccgatagagtca |
233 |
Q |
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| T |
17232857 |
ctgtttcaaaaacatggttccaattttcaatttgattaaatatttttgtacaggcatttttcaacctaagggcatcgctgtgcctgatccgatagagtca |
17232758 |
T |
|
| Q |
234 |
atttgtaccatatggggaagtgatccccctttcttatggttcatattctcatgttagtgtgcaatcatctggtaacatggtcctcataatgcaaactgct |
333 |
Q |
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| T |
17232757 |
atttgtaccatatggggaagtgatccccctttcttatggttcatattctcatgttagtgtgcaatcatctggtaacatggtcctcataatgcaaactact |
17232658 |
T |
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| Q |
334 |
acaagctctgggatgaacttagaaaggttaccctttcgcctatgcttct |
382 |
Q |
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| T |
17232657 |
acaagctctgggatgaacttagaaaggttaccctttcgcctatgattct |
17232609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 82 - 308
Target Start/End: Complemental strand, 22768837 - 22768616
Alignment:
| Q |
82 |
tatctcaagctattaagttgttattcgtaatcttatgatttgatataattcactgtttcaaaaaca-tggttccaattttcaatttgattaaatattttt |
180 |
Q |
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| T |
22768837 |
tatctcaagctattatgttattattcttaa-cttgtgaatttatttgattcactgttaaaaaaaatgtggttctaattttcaattt----atatattttt |
22768743 |
T |
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| Q |
181 |
gtacaggcatttttcaacctaagggcatcgctgtgcctgatccgatagagtcaatttgtaccatatggggaagtgatccccctttcttatggttcatatt |
280 |
Q |
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| T |
22768742 |
ctacaggtatttttcaacctaaaggcatcactgtgcctgatccaatacaatcaatttgtaccagatggggaagcgat-cccctttcttatggttcatact |
22768644 |
T |
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| Q |
281 |
ctcatgttagtgtgcaatcatctggtaa |
308 |
Q |
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| T |
22768643 |
ctcatgttagtgtgcaatcatctggtaa |
22768616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 308
Target Start/End: Complemental strand, 21646420 - 21646226
Alignment:
| Q |
109 |
taatcttatgatttgatataattcactgtttcaaaaacatggttccaattttcaatttgattaaatatttttgtacaggcatttttcaacctaagggcat |
208 |
Q |
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| T |
21646420 |
taatcttatgaattaatataattcactgtttaaaaaatgtggttccgattatcatttt----atatatctttctgcaggtatttttcaacctaaaggcat |
21646325 |
T |
|
| Q |
209 |
cgctgtgcctgatccgatagagtcaatttgtaccatatggggaagtgatccccctttcttatggttcatattctcatgttagtgtgcaatcatctggtaa |
308 |
Q |
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| T |
21646324 |
caatgtgcctgatccaatacaatcaatttgtacgagatggggaagcgatccct-tttcttatggttcatactctcatgtcagtgtgcaatcatctggtaa |
21646226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 23289839 - 23289765
Alignment:
| Q |
308 |
acatggtcctcataatgcaaactgctacaagctctgggatgaacttagaaaggttaccctttcgcctatgcttct |
382 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||||||||||| | |||||||| ||| |||| |
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| T |
23289839 |
acatggtcctcataatgccagcttctacaagctctgggatgaacttagaaaggtttctctttcgcccatgattct |
23289765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 21624513 - 21624469
Alignment:
| Q |
264 |
ttcttatggttcatattctcatgttagtgtgcaatcatctggtaa |
308 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
21624513 |
ttcttatggttcatactctcatgtcagtgtgcaatcatctggtaa |
21624469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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