View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5449_low_6 (Length: 237)
Name: NF5449_low_6
Description: NF5449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5449_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 24552901 - 24553087
Alignment:
| Q |
3 |
acgaaatgacaaagccattataaatttcctcccttcccttatctcatgtagcttccataaaagtctacctttagaccgtcagagtaggatgacctccatg |
102 |
Q |
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| T |
24552901 |
acgaaatgacaaagccattataaatttcctcccttcccttatctcatgtagcttc-ataaaagtctacgtttagaccgtcagagtaggatgaccttcatg |
24552999 |
T |
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| Q |
103 |
gttctatatacatgtgttatgcataaacaaagtttcatgtaaagcataaacaaagtttcagagcaattttggttttgatatgaattat |
190 |
Q |
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| T |
24553000 |
gttctatatacatgtgttatgcataaacaaagtttcatgtaaagcataaacaaagtttcagagcaattttgattttgatatgaattat |
24553087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 24559049 - 24559246
Alignment:
| Q |
13 |
aaagccattataaatttcctcccttcccttatctcatgtagcttccataaaagtctacctttagaccgtcagagtaggatgacctccatggttctatata |
112 |
Q |
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| T |
24559049 |
aaagccattataaatttcctcctttcctttatctcatgtagcttccataaaagtctacgtttagaccgtcagagtaggatgacctccatgattctatata |
24559148 |
T |
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| Q |
113 |
catgtgttatgcataaacaaagtttcatgtaaagcataaacaaagtttcagagcaattttggttttgatatgaattatttatttcat-agtcacgtagac |
211 |
Q |
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| T |
24559149 |
catgtgttaagcataaataaagtttcatgtaaagca-----aaaatttcagagcaattttgatttagatatgaattatttatttcttaagtcacgtagac |
24559243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 24555984 - 24556122
Alignment:
| Q |
1 |
aaacgaaatgacaaagccattataaatttcctcccttcccttatctcatgtagcttccataaaagtctacctttagaccgtcagagtaggatgacctcca |
100 |
Q |
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| T |
24555984 |
aaacgaaatgacaaagccattatttatttcctcctttcccttatctcatgtagcttccataaaagtctacgtttagaccgtcagagtaggatgaccttca |
24556083 |
T |
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| Q |
101 |
tggttctatatacatgtgttatgcataaacaaagtttca |
139 |
Q |
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| T |
24556084 |
tggttctatatacatgtgttatgcataaacaaagtttca |
24556122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 24556106 - 24556150
Alignment:
| Q |
146 |
gcataaacaaagtttcagagcaattttggttttgatatgaattat |
190 |
Q |
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| T |
24556106 |
gcataaacaaagtttcagagcaattttggttttgatatgaattat |
24556150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 24553397 - 24553435
Alignment:
| Q |
152 |
acaaagtttcagagcaattttggttttgatatgaattat |
190 |
Q |
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| T |
24553397 |
acaaagtttcagagcaattttggttttgatatgaattat |
24553435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 24556447 - 24556485
Alignment:
| Q |
152 |
acaaagtttcagagcaattttggttttgatatgaattat |
190 |
Q |
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| T |
24556447 |
acaaagtttcagagcaattttggttttgatatgaattat |
24556485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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