View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5450-Insertion-2 (Length: 578)
Name: NF5450-Insertion-2
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450-Insertion-2 |
 | |
|
| [»] chr8 (8 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Complemental strand, 5281923 - 5281353
Alignment:
| Q |
8 |
aatggggggtggaagagttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagtt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5281923 |
aatggagggtggaagagttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagtt |
5281824 |
T |
|
| Q |
108 |
actgagttgaatcgagatagtgaaaaaagaggaggttacgaaaatgaggttttgcctgatcctcaagactctcatggttttcatctcactaaaaataaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5281823 |
actgagttgaatcgagatagtgaaaatagaggaggttacgaaaatgaggttttgcctaatcctcaagactctcatggttttcatctcactaaaaataaaa |
5281724 |
T |
|
| Q |
208 |
gtgagggagagatttctagcatcaaggatccaattggtacacaacttacacaagaggaagaaaaagtgattggtaacgttggatggaagccattttggga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5281723 |
gtgagggagagatttctagcatcaaggatccaattggtacacaacttacacaagaggaagaaaaagtgattggtaacgttggatggaagccattttggga |
5281624 |
T |
|
| Q |
308 |
ttatattaattattccaaagggacatccatgttgtgtttaatcatgttagcacaatctggttttatggctttgcaaacttcatcaacctattggcttgct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5281623 |
ttatattaattattccaaagggacatccatgttgtgtttaatcatgttagcacaatctggttttatggctttgcaaacttcatcaacctattggcttgct |
5281524 |
T |
|
| Q |
408 |
attggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaaggtcttact |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5281523 |
attggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaaggtcttact |
5281424 |
T |
|
| Q |
508 |
tgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgct |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5281423 |
tgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgct |
5281353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 8 - 574
Target Start/End: Original strand, 5307426 - 5307992
Alignment:
| Q |
8 |
aatggggggtggaagagttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagtt |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| | | ||| |||||| ||||||||||| |||||||| || ||||| |||| | || |
|
|
| T |
5307426 |
aatggagggtggaagagttattcaatcaggtagttatgagaatctcctgacaactggaaaagcctttgaacaacttgtgaaagcacataaggacacaatt |
5307525 |
T |
|
| Q |
108 |
actgagttgaatcgagatagtgaaaaaagaggaggttacgaaaatgaggttttgcctgatcctcaagactctcatggttttcatctcactaaaaataaaa |
207 |
Q |
| |
|
| ||||||||||| || || |||||| | | ||| || ||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
5307526 |
aatgagttgaatcaagttaatgaaaataaaagagattctgaaaatgaggttttgtctaatcctcaagactatcatggttttcctctcactaaaaatcaaa |
5307625 |
T |
|
| Q |
208 |
gtgagggagagatttctagcatcaaggatccaattggtacacaacttacacaagaggaagaaaaagtgattggtaacgttggatggaagccattttggga |
307 |
Q |
| |
|
| ||||||| | ||| || ||||||| |||||| ||| || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5307626 |
gcgagggagtggttttaagtatcaagggtccaataggtgcaaaacttacacaagaggaagaaaaagtgattggcaatgttggatggaagccattttggga |
5307725 |
T |
|
| Q |
308 |
ttatattaattattccaaagggacatccatgttgtgtttaatcatgttagcacaatctggttttatggctttgcaaacttcatcaacctattggcttgct |
407 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||||||| || ||| ||| |||||| |||| |||||||||| ||||||||||||| |||||||||| |
|
|
| T |
5307726 |
ttatgttaattattccaaagggacattcatgctgtgtttgattgtgtcagcccaatctatttttttggctttgcagacttcatcaaccttttggcttgct |
5307825 |
T |
|
| Q |
408 |
attggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaaggtcttact |
507 |
Q |
| |
|
|| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
5307826 |
ataaccattgaaattccaaaagtaaccaatgtcaccttgattggagtttatgcattaatttctttttctagtgctgcttttatatatgtaagatcttact |
5307925 |
T |
|
| Q |
508 |
tgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaa |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || |||||||| || |||||||||||||| |
|
|
| T |
5307926 |
tgactgcacttttgggattaaaagcttctactgctttcttctcaagcttcactacagctatcttcaa |
5307992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 574
Target Start/End: Complemental strand, 14949151 - 14948594
Alignment:
| Q |
17 |
tggaagagttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagttactgagttg |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
14949151 |
tggaaaagttattcaatcaggtagttatgagaatctcctaaaatctggaacagcctttgaactacttgtgagtgctcataaagacacaattaatgagttg |
14949052 |
T |
|
| Q |
117 |
aatcgagatagtgaaaaaagaggaggttacgaaaatgaggttttgcctgatcctcaagactctcatggttttcatctcactaaaaataaaagtgagggag |
216 |
Q |
| |
|
|||| |||||||||||| | ||||||| ||||||||||||||| || |||||||||||| |||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
14949051 |
aatcaagatagtgaaaataatggaggttctgaaaatgaggttttgtctaatcctcaagacttgcatggtttatatctcactaaaaatcaaagtgaaggag |
14948952 |
T |
|
| Q |
217 |
agatttctagcatcaaggatccaattggtacacaacttacacaagaggaagaaaaagtgattggtaacgttggatggaagccattttgggattatattaa |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
14948951 |
agatttctagcatcaagggtccaattggtgcacagcttacacaagaggaagaaaaagtgactggtaatgttggatggaagccattctgggattatgttaa |
14948852 |
T |
|
| Q |
317 |
ttattccaaagggacatccatgttgtgtttaatcatgttagcacaatctggttttatggctttgcaaacttcatcaacctattggcttgctattggcatt |
416 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| |||| ||| | ||||||||| |||||||||||| | |||| |
|
|
| T |
14948851 |
ctattccaaagggacatccatgatgtgtttcatcatgttagcacaatctgctttttatacttttcaatttgcatcaaccttttggcttgctatagccatt |
14948752 |
T |
|
| Q |
417 |
gaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatttaaggtcttacttgactgcac |
516 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||| | | |||||| || ||||| ||||||||||||||| |
|
|
| T |
14948751 |
gaaattccaaaagtaactaatgccaacttgattggagtttactcattaatttcttttgttagcgtcgtgtttgtacatataaggacttacttgactgcac |
14948652 |
T |
|
| Q |
517 |
ttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaa |
574 |
Q |
| |
|
|| | |||||||||||||| ||||| | || |||||||| || |||||||||||||| |
|
|
| T |
14948651 |
ttcttggattaaaagcttccgctgctttcttctcaagcttcactacagctatcttcaa |
14948594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 196 - 574
Target Start/End: Complemental strand, 5289767 - 5289389
Alignment:
| Q |
196 |
ctaaaaataaaagtgagggagagatttctagcatcaaggatccaattggtacacaacttacacaagaggaagaaaaagtgattggtaacgttggatggaa |
295 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5289767 |
ctaaacatcaaagtgagggagagatttctagtatcaagggtccaattggagcacagcttacacaagaggaagaaaaagtgattggtaatgttggatggaa |
5289668 |
T |
|
| Q |
296 |
gccattttgggattatattaattattccaaagggacatccatgttgtgtttaatcatgttagcacaatctggttttatggctttgcaaacttcatcaacc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289667 |
gccattttgggattatattaattattccaaagggacattcatgctgtgtatgatcatgttatcacaatctggttttatggctttgcaaacttcatcaacc |
5289568 |
T |
|
| Q |
396 |
tattggcttgctattggcattgaaattccaaaagtaactaataccaccttgattggagtttatgcattaatttctttttctagtgctgcttttgtatatt |
495 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5289567 |
tattggcttgctattgccattgaaattccaaaagtaactaatgccgccttgattggagtttatgcattaatttctttttctagtgctgcttttgtttatg |
5289468 |
T |
|
| Q |
496 |
taaggtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaa |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||| || |||||||||||||| |
|
|
| T |
5289467 |
taaggtcttacttgactgcacttttgggattaaaagcttctactgttttcttctcaagcttcactacagctatcttcaa |
5289389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 152 - 574
Target Start/End: Original strand, 15126336 - 15126758
Alignment:
| Q |
152 |
tgaggttttgcctgatcctcaagactctcatggttttcatctcactaaaaataaaagtgagggagagatttctagcatcaaggatccaattggtacacaa |
251 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| ||||||| |||||| |||| || |||||||||||||||||| ||| | |||||||| | || |
|
|
| T |
15126336 |
tgaggttttgtctaatcctcaagactctcatggtttttatctcacgaaaaatcaaagcgaaggagagatttctagcatccagggttcaattggtgctcag |
15126435 |
T |
|
| Q |
252 |
cttacacaagaggaagaaaaagtgattggtaacgttggatggaagccattttgggattatattaattattccaaagggacatccatgttgtgtttaatca |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||| ||| |
|
|
| T |
15126436 |
cttacacaagaggaagaaaaagtgattggtaatgttggatggaagccactttgggattatattaattattccaatgggacattgatgtcgtgtttggtca |
15126535 |
T |
|
| Q |
352 |
tgttagcacaatctggttttatggctttgcaaacttcatcaacctattggcttgctattggcattgaaattccaaaagtaactaataccaccttgattgg |
451 |
Q |
| |
|
| |||| ||||| | ||||| |||||||||| |||||||| | || ||||||||||| | |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15126536 |
tattaggacaatgttgttttttggctttgcagacttcatcgaacttttggcttgctacagccattgaaattccaaaagtaactgataccaccttgattgg |
15126635 |
T |
|
| Q |
452 |
agtttatgcattaatttctttttctagtgctgcttttgtatatttaaggtcttacttgactgcacttttgggattaaaagcttctactgctattttttca |
551 |
Q |
| |
|
||||||||||||| | ||| |||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||||| || ||| | || ||| |
|
|
| T |
15126636 |
agtttatgcattactctctatttctagtacttcttttgtatatgtaaggtcttactttgctgcacttttgggattaaaagcttcgacggctttcttctca |
15126735 |
T |
|
| Q |
552 |
agctttacgacagctatcttcaa |
574 |
Q |
| |
|
||||| || ||| |||||||||| |
|
|
| T |
15126736 |
agcttcactacatctatcttcaa |
15126758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 248 - 574
Target Start/End: Original strand, 5314628 - 5314954
Alignment:
| Q |
248 |
acaacttacacaagaggaagaaaaagtgattggtaacgttggatggaagccattttgggattatattaattattccaaagggacatccatgttgtgttta |
347 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| | ||||| ||||||||||| |||||||||||| || ||||| || ||| |||||||||||| |
|
|
| T |
5314628 |
acaacttacaaaagaagaagaaaaagtgattggtgatgttggttggaagccattctgggattatatttctttttccaggggatcattcatgttgtgtttt |
5314727 |
T |
|
| Q |
348 |
atcatgttagcacaatctggttttatggctttgcaaacttcatcaacctattggcttgctattggcattgaaattccaaaagtaactaataccaccttga |
447 |
Q |
| |
|
||||||||||||||||| | ||||| | |||||| ||| |||| ||| |||||||||||||| ||||||||||| ||| ||| ||| | ||||||||| |
|
|
| T |
5314728 |
atcatgttagcacaatccgcatttatagttttgcagactacatcctccttttggcttgctattgccattgaaattcaaaacgtatctagtgccaccttga |
5314827 |
T |
|
| Q |
448 |
ttggagtttatgcattaatttctttttctagtgctgcttttgtatatttaaggtcttacttgactgcacttttgggattaaaagcttctactgctatttt |
547 |
Q |
| |
|
||||||||||| |||||| ||||||| |||| | ||||||||| | ||||||||||||| |||| | | |||||||||||||||| ||| | || |
|
|
| T |
5314828 |
ttggagtttattcattaacttcttttgctagcattttgtttgtatatctgaggtcttacttgaatgcatatctcggattaaaagcttctaatgccttctt |
5314927 |
T |
|
| Q |
548 |
ttcaagctttacgacagctatcttcaa |
574 |
Q |
| |
|
|||||||| || | |||||||||||| |
|
|
| T |
5314928 |
ctcaagcttcactaaagctatcttcaa |
5314954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 5289921 - 5289769
Alignment:
| Q |
9 |
atggggggtggaagagttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagtta |
108 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||| | | ||| |||||||||||||||||| ||||||||| || ||||| |||| | ||| |
|
|
| T |
5289921 |
atggagggtggaaaagttattcaatcaggtagttatgagaatctcctgacagctggaacagcctttgaacaacttgtgagagcacataaggacacaatta |
5289822 |
T |
|
| Q |
109 |
ctgagttgaatcgagatagtgaaaaaagaggaggttacgaaaatgaggttttg |
161 |
Q |
| |
|
|||||||||||| |||| ||||| | || ||||| ||||||||||||||| |
|
|
| T |
5289821 |
ctgagttgaatcaagatcaggaaaataaagaaggttctgaaaatgaggttttg |
5289769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 15126216 - 15126307
Alignment:
| Q |
8 |
aatggggggtggaagagttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaag |
99 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15126216 |
aatggaggatggaaaagttattcaatcaggtagttatgagaatctcctaaaatctggaacagcctttgaactacttgtgagtgctcataaag |
15126307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 249 - 510
Target Start/End: Complemental strand, 31525767 - 31525506
Alignment:
| Q |
249 |
caacttacacaagaggaagaaaaagtgattggtaacgttggatggaagccattttgggattatattaattattccaaagggacatccatgttgtgtttaa |
348 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| | ||||| ||||||||||| ||||||||||| ||||||||| || ||| ||| ||||||| | |
|
|
| T |
31525767 |
caacttacaaaagaggaagaaaaagagattggtgatgttggctggaagccattctgggattatatatcttattccaagggatcattgatgctgtgtttta |
31525668 |
T |
|
| Q |
349 |
tcatgttagcacaatctggttttatggctttgcaaacttcatcaacctattggcttgctattggcattgaaattccaaaagtaactaataccaccttgat |
448 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||||||| || ||||||||||||||||| | | ||| |||||| |
|
|
| T |
31525667 |
ttgtgttagcacaatctgcttttatggctttgcagactgcatcatccttttggcttgctattgcgatcgaaattccaaaagtaacgagtgccaacttgat |
31525568 |
T |
|
| Q |
449 |
tggagtttatgcattaatttctttttctagtgctgcttttgtatatttaaggtcttacttga |
510 |
Q |
| |
|
|||||||||| ||||||||||||| || ||| | ||||||||| ||||||||||||||| |
|
|
| T |
31525567 |
tggagtttattcattaatttctttcactggtgttatgtttgtatatataaggtcttacttga |
31525506 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 31525969 - 31525851
Alignment:
| Q |
8 |
aatggggggtggaagagttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaagacaaagtt |
107 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||||| | ||| | |||| ||||||||||||| |||||||| || || |||||| | || |
|
|
| T |
31525969 |
aatggaggatggaaaagttattcaatcaggtagttatgagaatctcctaatagctgggacagcctttgaacaacttgtgaacgcgcacaaagacgcactt |
31525870 |
T |
|
| Q |
108 |
actgagttgaatcgagata |
126 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
31525869 |
actgagttgaatcaagata |
31525851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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