View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5450-Insertion-3 (Length: 232)

Name: NF5450-Insertion-3
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5450-Insertion-3
NF5450-Insertion-3
[»] chr7 (1 HSPs)
chr7 (7-232)||(29625062-29625287)
[»] chr5 (4 HSPs)
chr5 (42-165)||(35364919-35365045)
chr5 (50-159)||(35374473-35374582)
chr5 (48-165)||(35404646-35404763)
chr5 (195-232)||(35404796-35404833)
[»] chr1 (4 HSPs)
chr1 (42-149)||(10421630-10421740)
chr1 (48-165)||(10411975-10412092)
chr1 (122-165)||(10417698-10417741)
chr1 (195-232)||(10417628-10417665)
[»] chr2 (4 HSPs)
chr2 (48-165)||(30631253-30631370)
chr2 (116-165)||(30633426-30633475)
chr2 (116-165)||(30661155-30661204)
chr2 (116-165)||(30669835-30669884)
[»] chr8 (1 HSPs)
chr8 (123-212)||(13563503-13563592)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 29625287 - 29625062
Alignment:
Q  7 aaatctaacctttctcagagtgctcatacttgtacacgtcgacttgcatggtgaaattccaagtcaagttggccgtttgaagcaactggaagttctcaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29625287 aaatctaacctttctcagagtgctcatacttgtacacgtcgacttgcatggtgaaattccaagtcaagttggccgtttgaagcaactggaagttctcaac 29625188  T
Q  107 ttaaccgataacaaacttcaaggagagattcctatagagctcacaaactgcacaaatatgaagaaaattgttttggagaaaaaccaactcacaggaagag 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29625187 ttaaccgataacaaacttcaaggagagattcctacagagctcacaaactgcacaaatatgaagaaaattgttttggagaaaaaccaactcacaggaaaag 29625088  T
Q  207 ttcccacatggttcggatcaatgatg 232  Q
    ||||||||||||||||||||||||||    
T  29625087 ttcccacatggttcggatcaatgatg 29625062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 35364919 - 35365045
Alignment:
Q  42 acgtcgacttgcatggtgaaattccaagtcaagttggccgtttgaagcaactggaagttctcaacttaaccgataa---caaacttcaaggagagattcc 138  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||  ||| || ||||  |||||||| | ||   |||||||||||||||||||||    
T  35364919 acgtcgacttgcatggtgaaattccaaaacaagttggtcgtttgaagcggctgcaaattcttcacttaaccaacaacagcaaacttcaaggagagattcc 35365018  T
Q  139 tatagagctcacaaactgcacaaatat 165  Q
    ||| |||||||| || ||| |||||||    
T  35365019 tatggagctcactaattgctcaaatat 35365045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 35374473 - 35374582
Alignment:
Q  50 ttgcatggtgaaattccaagtcaagttggccgtttgaagcaactggaagttctcaacttaaccgataacaaacttcaaggagagattcctatagagctca 149  Q
    ||||||||||||||||||||||| ||||| ||||| |||| | || |  ||||  |||||| ||| ||||| ||||| || ||| ||||||| || |||     
T  35374473 ttgcatggtgaaattccaagtcaggttggtcgtttaaagcgattgcatcttcttgacttaagcgacaacaatcttcatggtgaggttcctatggaactct 35374572  T
Q  150 caaactgcac 159  Q
    | ||||||||    
T  35374573 ctaactgcac 35374582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 35404646 - 35404763
Alignment:
Q  48 acttgcatggtgaaattccaagtcaagttggccgtttgaagcaactggaagttctcaacttaaccgataacaaacttcaaggagagattcctatagagct 147  Q
    ||||| |||||| ||||||||  ||||||||  ||||||||| | || |||||||  |||||  | | ||| | ||||||||||||||||| ||||||||    
T  35404646 acttgtatggtggaattccaaaacaagttggttgtttgaagcgattgcaagttctttacttagaccaaaaccatcttcaaggagagattcccatagagct 35404745  T
Q  148 cacaaactgcacaaatat 165  Q
    | | || ||| |||||||    
T  35404746 ctctaattgctcaaatat 35404763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 35404796 - 35404833
Alignment:
Q  195 tcacaggaagagttcccacatggttcggatcaatgatg 232  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  35404796 tcaccggaagagttcccacatggtttggatcaatgatg 35404833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 10421740 - 10421630
Alignment:
Q  42 acgtcgacttgcatggtgaaattccaagtcaagttggccgtttgaagcaactggaagttctcaacttaac---cgataacaaacttcaaggagagattcc 138  Q
    |||| ||||||||||||||||||||||  |||||||| ||||||||||  ||| |||||||  |||||||   | | |||||||||||||||||||||||    
T  10421740 acgttgacttgcatggtgaaattccaaaacaagttggtcgtttgaagcggctgcaagttcttcacttaaccaacaacaacaaacttcaaggagagattcc 10421641  T
Q  139 tatagagctca 149  Q
    ||| |||||||    
T  10421640 tatggagctca 10421630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 10412092 - 10411975
Alignment:
Q  48 acttgcatggtgaaattccaagtcaagttggccgtttgaagcaactggaagttctcaacttaaccgataacaaacttcaaggagagattcctatagagct 147  Q
    |||||||||||||||||||||  |||||||| |||||||||| | || |||||||  ||||||    |||| | ||||  ||||||||||| ||||||||    
T  10412092 acttgcatggtgaaattccaaaacaagttggtcgtttgaagcgattgcaagttcttgacttaagatttaaccatcttcttggagagattcccatagagct 10411993  T
Q  148 cacaaactgcacaaatat 165  Q
    | | ||||||||||||||    
T  10411992 cgctaactgcacaaatat 10411975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 10417741 - 10417698
Alignment:
Q  122 cttcaaggagagattcctatagagctcacaaactgcacaaatat 165  Q
    ||||||||||||||||| ||||||||||| || |||||||||||    
T  10417741 cttcaaggagagattcccatagagctcactaattgcacaaatat 10417698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 10417665 - 10417628
Alignment:
Q  195 tcacaggaagagttcccacatggttcggatcaatgatg 232  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  10417665 tcacaggaagaattcccacatggtttggatcaatgatg 10417628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 30631253 - 30631370
Alignment:
Q  48 acttgcatggtgaaattccaagtcaagttggccgtttgaagcaactggaagttctcaacttaaccgataacaaacttcaaggagagattcctatagagct 147  Q
    |||||||||||||||||||||  |||||||| | |||||| | | ||  ||||||  |||||    | ||||| ||||||||||||||||| ||||||||    
T  30631253 acttgcatggtgaaattccaacacaagttggtcttttgaaacgattgcgagttcttgacttagtaaacaacaatcttcaaggagagattcccatagagct 30631352  T
Q  148 cacaaactgcacaaatat 165  Q
    ||| ||||||||||||||    
T  30631353 cactaactgcacaaatat 30631370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 30633426 - 30633475
Alignment:
Q  116 aacaaacttcaaggagagattcctatagagctcacaaactgcacaaatat 165  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  30633426 aacaatcttcaaggagagattcccatagagctcactaactgcacaaatat 30633475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 30661155 - 30661204
Alignment:
Q  116 aacaaacttcaaggagagattcctatagagctcacaaactgcacaaatat 165  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  30661155 aacaatcttcaaggagagattcccatagagctcactaactgcacaaatat 30661204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 30669835 - 30669884
Alignment:
Q  116 aacaaacttcaaggagagattcctatagagctcacaaactgcacaaatat 165  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  30669835 aacaatcttcaaggagagattcccatagagctcactaactgcacaaatat 30669884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 13563503 - 13563592
Alignment:
Q  123 ttcaaggagagattcctatagagctcacaaactgcacaaatatgaagaaaattgttttggagaaaaaccaactcacaggaagagttccca 212  Q
    |||||||||||||||| ||||||||| | || ||||| ||||| |||| ||||| | ||  ||  || |||||||| |||||||||||||    
T  13563503 ttcaaggagagattccgatagagctcgctaattgcactaatatcaagataattgatatgtggagcaatcaactcactggaagagttccca 13563592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University