View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5450-Insertion-4 (Length: 535)

Name: NF5450-Insertion-4
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5450-Insertion-4
NF5450-Insertion-4
[»] chr1 (1 HSPs)
chr1 (8-535)||(8437920-8438447)


Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 8 - 535
Target Start/End: Original strand, 8437920 - 8438447
Alignment:
Q  8 ggataaaccttaacacatggcccacaatgtttaagaccaacatcaagaacaataagcttatgatcaatcttatgatcctcaataagtttctcaacatctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8437920 ggataaaccttaacacatggcccacaatgtttaagaccaacatcaagaacaataagcttatgatcaatcttatgatcctcaataagtttctcaacatctt 8438019  T
Q  108 ctctgttgtgaagttgcactacacctgaatggttatcaccgtagtataacacatcaccaacaagcatatctggaccaatagcttcttcttcatgaatttt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8438020 ctctgttgtgaagttgcactacacctgaatggttatcaccgtagtataaaacatcaccaacaagcatatctggaccaatagcttcttcttcatgaatttt 8438119  T
Q  208 ttctttgctcttgtagaaagtgaagtgtggtactttatcaaccttttctcttttacagagttcttttgttttctctgattcatctcccataacaagaaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8438120 ttctttgctcttgtagaaagtgaagtgtggtactttatcaaccttttctcttttacagagttcttttgttttctctgattcatctcccataacaagaaga 8438219  T
Q  308 aactcaacatcgttacatgttcggcttaggtcaaccaagaaagggtatatctctatgctttctgagtcgtcgcttgtagcgtactcaacaacaacgagtt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8438220 aactcaacatcgttacatgttcggcttaggtcaaccaagaaagggtatatctctatgctttctgagtcgtcgcttgtagcgtactcaacaacaacgagtt 8438319  T
Q  408 tgtcttttgctgattcaagtgcttcgtcgaactcttctatgctgtgaactctttgaactcttgcatcttttttcttcttagcatctgaagctgctgtgcc 507  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8438320 tatcttttgctgattcaagtgcttcgtcgaactcttctatgctatgaactctttgaactcttgcatcttttttcttcttagcatctgaagctgctgtgcc 8438419  T
Q  508 tgttgcttttgtgataacaacacgtcgt 535  Q
    ||||||||| ||||||||||||||||||    
T  8438420 tgttgctttggtgataacaacacgtcgt 8438447  T

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