View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5450-Insertion-5 (Length: 450)
Name: NF5450-Insertion-5
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450-Insertion-5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 156 - 370
Target Start/End: Complemental strand, 42230793 - 42230578
Alignment:
| Q |
156 |
tgaagaaatgttaactcatgtacacgtgatattttggcattggttaaagaattaatttattttttgagtttaatttagttggtaagaatatataatgtat |
255 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42230793 |
tgaagaaatgttacctcatgtacacgtgatattttggcattggttaaagaattaatttattttatgagtttaatttagttgataagaatatataatgtat |
42230694 |
T |
|
| Q |
256 |
aatatacataaggttaggggttcaaaccccatacattaccg-gnnnnnnngaattaattaattttcttcatctcttttatccattttgaaataataggaa |
354 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42230693 |
aatatacataaggtttgaggttcaaatcccatacactaccgaaaaaaaaagaattaattaattttcttcatctcttttatccattttgaaataataggaa |
42230594 |
T |
|
| Q |
355 |
gagcatcaataagaag |
370 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
42230593 |
gaacatcaataagaag |
42230578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 42230926 - 42230853
Alignment:
| Q |
23 |
ttaaatagataaataaccgagtaagaggaaatattcacggatgtacacagtacacccttagtccaaaataagtg |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42230926 |
ttaaatagataaataaccgagtaagaggaaatattcacggatgtacacactacacccttagtccaaaataagtg |
42230853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University