View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5450-Insertion-7 (Length: 438)
Name: NF5450-Insertion-7
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450-Insertion-7 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 679594 - 679167
Alignment:
| Q |
8 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
679594 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcat |
679495 |
T |
|
| Q |
108 |
cccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
679494 |
cccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatc |
679395 |
T |
|
| Q |
208 |
atagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttca-- |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
679394 |
atagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatgtagttatatgcctcattttcatt |
679295 |
T |
|
| Q |
306 |
nnnnnnnnnctttccagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaaca |
405 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
679294 |
tttttttttctttctagttctgagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaaca |
679195 |
T |
|
| Q |
406 |
tggtttatccttatatatgagtgcttggg |
434 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
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|
| T |
679194 |
t-gtttatccttatatatgagtgcttggg |
679167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 116 - 434
Target Start/End: Complemental strand, 751290 - 750974
Alignment:
| Q |
116 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
751290 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
751191 |
T |
|
| Q |
216 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
751190 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- |
751092 |
T |
|
| Q |
316 |
tttccagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatggtttatcc |
415 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
751091 |
tttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacat-gtttatcc |
750993 |
T |
|
| Q |
416 |
ttatatatgagtgcttggg |
434 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
750992 |
ttatatatgagtgcttggg |
750974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 747512 - 747402
Alignment:
| Q |
8 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcat |
107 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
747512 |
atcatttcattgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactttgggggctgattattggaaaagaatagagggcat |
747413 |
T |
|
| Q |
108 |
cccacattatt |
118 |
Q |
| |
|
||||||||||| |
|
|
| T |
747412 |
cccacattatt |
747402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 9564904 - 9564818
Alignment:
| Q |
322 |
gttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgg |
408 |
Q |
| |
|
||||| |||||||||||||||||| | |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9564904 |
gttctgagaattagaagaatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacatgg |
9564818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 118 - 417
Target Start/End: Original strand, 2632504 - 2632786
Alignment:
| Q |
118 |
ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagat----tctttcaacacttgctcttttgattatcatagta |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || | |||||||||||||||| | ||||||| |||| | ||||| ||||||||||| |
|
|
| T |
2632504 |
ttcaattctccaaaccctgcagttttaaaatcagcacatt----gttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatagt- |
2632598 |
T |
|
| Q |
214 |
tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnn |
313 |
Q |
| |
|
|||| ||||||||||||| | || |||||| | ||||||||| | ||||||||||||||||| || | | || |||||||| |||||| |
|
|
| T |
2632599 |
-catacacttcacatgtgtgtgaataattcata---tttagctttttgaaacttatagtgagttttaa-tgcaattctatgcctcgttttcatt------ |
2632687 |
T |
|
| Q |
314 |
nctttccagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatggtttat |
413 |
Q |
| |
|
|||| ||| | ||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
2632688 |
--tttcttgttttgagaattagaagaatgctgc--atatttgagtattttccaagataatgaaaaggtgaggttgttaacagaatggaaacat-gtttat |
2632782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 7324790 - 7324687
Alignment:
| Q |
8 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcat |
107 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||||||| |||| | ||| ||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
7324790 |
atcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaagaatagaggacat |
7324691 |
T |
|
| Q |
108 |
ccca |
111 |
Q |
| |
|
|||| |
|
|
| T |
7324690 |
ccca |
7324687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 9595004 - 9594898
Alignment:
| Q |
8 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcat |
107 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | || |||| |||| || |||| |||| ||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
9595004 |
atcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactttggggactgattattggacaagaatagaggacat |
9594905 |
T |
|
| Q |
108 |
cccacat |
114 |
Q |
| |
|
||||||| |
|
|
| T |
9594904 |
cccacat |
9594898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 2491768 - 2491871
Alignment:
| Q |
8 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcat |
107 |
Q |
| |
|
|||||||||||||| | ||||||| ||| ||||||||| ||||| || ||| ||||| ||||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
2491768 |
atcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggacaagaatcaaggacat |
2491867 |
T |
|
| Q |
108 |
ccca |
111 |
Q |
| |
|
|||| |
|
|
| T |
2491868 |
ccca |
2491871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 9562338 - 9562235
Alignment:
| Q |
8 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcat |
107 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| | |||| || ||| ||||| ||||||||||| ||||||||||| |||||||||| ||| |
|
|
| T |
9562338 |
atcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagaggacat |
9562239 |
T |
|
| Q |
108 |
ccca |
111 |
Q |
| |
|
|||| |
|
|
| T |
9562238 |
ccca |
9562235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 9566197 - 9566094
Alignment:
| Q |
8 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcat |
107 |
Q |
| |
|
|||||||||||||||| ||||| | || ||||||| || |||| || ||| ||||| ||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
9566197 |
atcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggacaagaatagaggacat |
9566098 |
T |
|
| Q |
108 |
ccca |
111 |
Q |
| |
|
|||| |
|
|
| T |
9566097 |
ccca |
9566094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 7443363 - 7443269
Alignment:
| Q |
8 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagag |
102 |
Q |
| |
|
|||||||||||||||| |||| ||||||| | ||||||| || | ||||||| ||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
7443363 |
atcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggagaagaatagag |
7443269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 2501843 - 2501944
Alignment:
| Q |
8 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcat |
107 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| ||||| || ||| | ||||||||||||||| ||||||||||| || ||||||| ||| |
|
|
| T |
2501843 |
atcatttcattgataattataaggtcattgttgtttctgacgaaaatgaagttagggttaatactttggggactgattattggagaaagatagaggacat |
2501942 |
T |
|
| Q |
108 |
cc |
109 |
Q |
| |
|
|| |
|
|
| T |
2501943 |
cc |
2501944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 754952 - 754888
Alignment:
| Q |
39 |
tgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg |
103 |
Q |
| |
|
||||||| || |||| || ||||||||| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
754952 |
tgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggacaagaatagagg |
754888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 2631032 - 2631138
Alignment:
| Q |
12 |
tttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatccca |
111 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||| |||| || |||| | || ||||||| ||| ||||||||||| ||||||||| | ||||||| |
|
|
| T |
2631032 |
tttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactttagggactgattattggaaaagaatagacgacatccca |
2631131 |
T |
|
| Q |
112 |
cattatt |
118 |
Q |
| |
|
|||||| |
|
|
| T |
2631132 |
tattatt |
2631138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 2476377 - 2476426
Alignment:
| Q |
62 |
gtgttaatactttgggggatgattattggacaagaatagagggcatccca |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
2476377 |
gtgttaatactttggggactgattattggacaagaatgcaggacatccca |
2476426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 2474791 - 2474895
Alignment:
| Q |
8 |
atcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttggggga-tgattattggacaagaatagagggca |
106 |
Q |
| |
|
|||||||||||||||| | |||| |||| ||||||| |||| || ||| ||||||||||||| ||| ||||||||||||||||||||||| || |
|
|
| T |
2474791 |
atcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttttaaggactgattattggacaagaatagaggaca |
2474890 |
T |
|
| Q |
107 |
tccca |
111 |
Q |
| |
|
||||| |
|
|
| T |
2474891 |
tccca |
2474895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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