View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450-Insertion-8 (Length: 390)
Name: NF5450-Insertion-8
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450-Insertion-8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 180 - 390
Target Start/End: Original strand, 21174913 - 21175123
Alignment:
| Q |
180 |
gttatctccttcctataaaacactttcacagcactcacaaaatgaatagcgtaaacactagcagcaccagaactcgcaaatatcgtaattagcacgtgct |
279 |
Q |
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| T |
21174913 |
gttatctccttcctataaaacactttcacagtactcacaaaatgaatagcgtaaacactagcagcaccagaactcgcaaatatcgtaattagcacgtgct |
21175012 |
T |
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| Q |
280 |
ctttcacgttaaatttccctggattcaacgtaaactcccatttctttcctttcatgaaaactctcttcgttatagttgatgccattagatgccccaatgg |
379 |
Q |
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| T |
21175013 |
ctttcacgttaaacttccctggattcaacgtaaactcccatttcttccctttcatgaaaactctcttcgttatagttgatgccattagatgccccaatgg |
21175112 |
T |
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| Q |
380 |
aaccaccgcta |
390 |
Q |
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||||||||||| |
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| T |
21175113 |
aaccaccgcta |
21175123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 21174741 - 21174845
Alignment:
| Q |
8 |
agaactaaagtcatggattgaacaaaaacaaacatacctgaaaagcgaaacttggacaagattttgtggccaccacataccagctggctccacaagatac |
107 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21174741 |
agaactaaagtcatggattgaacagaaacatacatacctgaaaagcgaaacttggacaagattttggggccaccacataccagctggctccacaagatac |
21174840 |
T |
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| Q |
108 |
ctccg |
112 |
Q |
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||||| |
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| T |
21174841 |
ctccg |
21174845 |
T |
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