View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5450_high_10 (Length: 334)
Name: NF5450_high_10
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 46266567 - 46266262
Alignment:
| Q |
19 |
gcttctgtctgtagttattatcaatgaggggaagagtcacgtggttattatatatgctatgtaacactgacatctcagattgaaggtgtgtccggtgtct |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46266567 |
gcttctgtctgtagttattattaatgaggggaagagtcacgtggttattatatattctatgtaacactgacatctcaaattgaaggtgtgtccggtgtct |
46266468 |
T |
|
| Q |
119 |
gacacatgttagtgtcggccaatgtgattatctataacaatgtgtcaatgacgtgtttgatgtccatgcatgtgtaagtgcttcatatgttatgtgtcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266467 |
gacacatgttagtgtcggccaatgtgattatctataacaatgtgtcaatgacgtgtttgatgtccatgcatgtgtaagtgcttcatatgttatgtgtcta |
46266368 |
T |
|
| Q |
219 |
ttttgcagggaaataatggtggtccccctcctaatccccaatctggaccaccagagcatcagaattctcgtggttccaacaacaatgcggtaattctttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266367 |
ttttgcagggaaataatggtggtccccctcctaatccccaatctggaccaccagagcatcagaattctcgtggttccaacaacaatgcggtaattctttt |
46266268 |
T |
|
| Q |
319 |
cctttg |
324 |
Q |
| |
|
|||||| |
|
|
| T |
46266267 |
cctttg |
46266262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University