View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5450_high_11 (Length: 300)

Name: NF5450_high_11
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5450_high_11
NF5450_high_11
[»] chr2 (6 HSPs)
chr2 (33-300)||(38941635-38941902)
chr2 (33-300)||(38941917-38942182)
chr2 (33-300)||(38942197-38942462)
chr2 (33-300)||(38942477-38942744)
chr2 (1-137)||(38941498-38941634)
chr2 (233-300)||(38942759-38942826)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 33 - 300
Target Start/End: Complemental strand, 38941902 - 38941635
Alignment:
Q  33 tactagtgagtcgtacccctaattctgaatctgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtcc 132  Q
    |||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38941902 tactggtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtcc 38941803  T
Q  133 atcacnnnnnnnctcagccatggcctgtgcatctttcatcggtttctttttcagctccatctgcatagtgatatagatatatagatagataagnnnnnnn 232  Q
    |||||       |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  38941802 atcactttttttctcagccatggcttgtgcatctttcatcggtttctttttcagctccatctgcatagtgatatagatatatagatagataagaaaaaaa 38941703  T
Q  233 taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattaaaaaaccaaatgcaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38941702 taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattaaaaaaccaaatgcaat 38941635  T

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Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 300
Target Start/End: Complemental strand, 38942182 - 38941917
Alignment:
Q  33 tactagtgagtcgtacccctaattctgaatctgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtcc 132  Q
    |||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38942182 tactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtcc 38942083  T
Q  133 atcacnnnnnnnctcagccatggcctgtgcatctttcatcggtttctttttcagctccatctgcatagtgatatagatatatagatagataagnnnnnnn 232  Q
    |||||       |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||           
T  38942082 atcactttttttctcagccatggcttgtgcatctttcatcggtttctttttcagctccatctgcatagtgatatag--atatagatagataagaaaaaaa 38941985  T
Q  233 taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattaaaaaaccaaatgcaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38941984 taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatgcaat 38941917  T

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Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 300
Target Start/End: Complemental strand, 38942462 - 38942197
Alignment:
Q  33 tactagtgagtcgtacccctaattctgaatctgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtcc 132  Q
    |||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38942462 tactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtcc 38942363  T
Q  133 atcacnnnnnnnctcagccatggcctgtgcatctttcatcggtttctttttcagctccatctgcatagtgatatagatatatagatagataagnnnnnnn 232  Q
    |||||       |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||           
T  38942362 atcactttttttctcagccatggcttgtgcatctttcatcggtttctttttcagctccatctgcatagtgatatag--atatagatagataagaaaaaaa 38942265  T
Q  233 taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattaaaaaaccaaatgcaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38942264 taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatgcaat 38942197  T

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Target: chr2; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 33 - 300
Target Start/End: Complemental strand, 38942744 - 38942477
Alignment:
Q  33 tactagtgagtcgtacccctaattctgaatctgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtcc 132  Q
    ||||| |||||| |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38942744 tactattgagtcatacccctacttgtgaaactgattcttcaggtccctctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtcc 38942645  T
Q  133 atcacnnnnnnnctcagccatggcctgtgcatctttcatcggtttctttttcagctccatctgcatagtgatatagatatatagatagataagnnnnnnn 232  Q
    |||||       ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  38942644 atcacttttttcctcagccttggcttgtgcatctttcatcggtttctttttcagctccatctgcatagtgatatagatatatagatagataagaaaaaaa 38942545  T
Q  233 taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattaaaaaaccaaatgcaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38942544 taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatgcaat 38942477  T

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Target: chr2; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 38941634 - 38941498
Alignment:
Q  1 aggagttaaactactactagtgcgtactactgtactagtgagtcgtacccctaattctgaatctgattcttcaggtccctctttctcctcagtgaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38941634 aggagttaaactactactagtgcgtactactgtactagtgagtcgtacccctaattctgaatctgattcttcaggtccctctttctcctcagtgaccttg 38941535  T
Q  101 agctgtctgccctttctatctttgaccagtccatcac 137  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  38941534 agctgtcttccctttctatctttgaccagttcatcac 38941498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 38942826 - 38942759
Alignment:
Q  233 taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattaaaaaaccaaatgcaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38942826 taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattcaaaaaccaaatgcaat 38942759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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