View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_high_18 (Length: 250)
Name: NF5450_high_18
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 8437462 - 8437272
Alignment:
| Q |
45 |
gcttattatagtgtgtacatgtttatattttcattttgacaagatcaaacttaactagaattgtatcaatgcaaataattaagaggaaattaaaataagc |
144 |
Q |
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| T |
8437462 |
gcttattatagtgtgtacatgtttatattttcattttgacaagatcaaacttaactagaattgtatcaatgcaaataa----gaggaaattaaaagaagc |
8437367 |
T |
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| Q |
145 |
tagtgaataatccaagagctgaccatgaaaaaccatatttgtttaatattacttg----tcgtcataatcttatggtatggcatttggcagacctc |
236 |
Q |
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| T |
8437366 |
tagtgactaatccaagagctgaccatgaaaaaccatatttgtttaatattacttacttttcgt-ataatcttatggtatggcatttgacaaacctc |
8437272 |
T |
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