View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_high_20 (Length: 241)
Name: NF5450_high_20
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26789401 - 26789621
Alignment:
| Q |
1 |
ctatagtattttcaaagagaacccaaaagataactaaatagaatgacctgaaaaatgagaaacaaaattgagtaatcaaactctatggataatctaaact |
100 |
Q |
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| T |
26789401 |
ctatggtattttcaaagagaacccaaaagataactaaatagaatgacctgaaaaatgagaaacaaaattgagtaatcaaactctatggataatttaaact |
26789500 |
T |
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| Q |
101 |
caacttttgtttatgaaattcgaccgcgagaacatctccaactagattacttataaagttttcaattatatagaccaatcaaacaaaactttaattttta |
200 |
Q |
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| T |
26789501 |
caacttttgtttatgaaattcgaccgtgacaacatctccaactagattacttataaagttttcaattatatagaccaatcaaacaaaactttaattttta |
26789600 |
T |
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| Q |
201 |
tcttactagagctgttctagg |
221 |
Q |
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|||||| ||||||| |||||| |
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| T |
26789601 |
tcttaccagagctgatctagg |
26789621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26816231 - 26816296
Alignment:
| Q |
1 |
ctatagtattttcaaagagaacccaaaagataactaaatagaatgacctgaaaaatgagaaacaaa |
66 |
Q |
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| T |
26816231 |
ctatggtattttcaaagagaacccaaaagataactaaatagaatgacctgcaaaatgagaaacaaa |
26816296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 26816340 - 26816379
Alignment:
| Q |
72 |
gtaatcaaactctatggataatctaaactcaacttttgtt |
111 |
Q |
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| T |
26816340 |
gtaatcaaactctatggataatctaaactcaacttttgtt |
26816379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 26783033 - 26783106
Alignment:
| Q |
6 |
gtattttcaaagagaacccaaaagataactaaatagaatgacctga----aaaatgagaaacaaaattgagtaa |
75 |
Q |
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||||| |||||||||| |||||| | |||||||| |||||||||| ||||||||||||||| |||||||| |
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| T |
26783033 |
gtattctcaaagagaatccaaaatacaactaaatgcaatgacctgaaaataaaatgagaaacaaatttgagtaa |
26783106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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