View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_high_23 (Length: 222)
Name: NF5450_high_23
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 10011662 - 10011479
Alignment:
| Q |
1 |
tttcccacgtatgttcacacactaaaccagcatctatcataacnnnnnnnattctagctcttcttcccatgctaactataggaatcacagtgctctcttc |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10011662 |
tttcccacgcatgttcacacactaaaccagcatctatcataactttttttattctagctcttcttcccatgctaactttaggaatcacagtgctctcttc |
10011563 |
T |
|
| Q |
101 |
ccttggttcaacaacacagcatccatccaactcttcaacgccatctccatagctgcatgttctccgccagaatccttcatcaac |
184 |
Q |
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||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10011562 |
ccttggttcaacagcacagtatccatccaactcttcaatgccatctccatagctgcatgttctccgccagaatctttcatcaac |
10011479 |
T |
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