View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_high_3 (Length: 487)
Name: NF5450_high_3
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 22 - 436
Target Start/End: Original strand, 1743616 - 1744035
Alignment:
| Q |
22 |
gtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1743616 |
gtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatcaaggtccaacccagattgtgaaatttgatgaaggatgt |
1743715 |
T |
|
| Q |
122 |
cttctagttcaccattgaagtgactaaaatctatgactttgagacttaaaaatctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgt |
221 |
Q |
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| T |
1743716 |
cttctagttcaccattgaagtgactaaaatctatggctttgagccttaaaaatctcgagagtagccgagaaaggaatagaatagtggaatcatgtattgt |
1743815 |
T |
|
| Q |
222 |
tagagagaatttaactcggtttgtaaaggaaaggaatttcttgcagaccatagaaacagactccaaatcatgtccttggtcaaggagtttgaagattgat |
321 |
Q |
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|| ||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||| |
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| T |
1743816 |
taaagaaaatttcacttggtttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaatcttttccttggccaaggaatttgaagattgat |
1743915 |
T |
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| Q |
322 |
tcccaacattcttgtggaaaatctttcaccaacatatttgatataat-----ttgatctagaaagttaagatgagaatgatcaacaaatgtaatggctta |
416 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1743916 |
tcccaacattcttgaggaaaatctttcaataacatatttgatataataaatgttgatctagaaagttaagatgagaatgatcaacaaatttaatggctta |
1744015 |
T |
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| Q |
417 |
atcatttatcaactcaataa |
436 |
Q |
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| T |
1744016 |
atcatttataaactcaataa |
1744035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 366
Target Start/End: Complemental strand, 2006764 - 2006422
Alignment:
| Q |
24 |
accgagttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtct |
123 |
Q |
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|||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||| | | || |
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| T |
2006764 |
accgagctctcgcaatccatcaacaggaactgttctctggttggaaagattaacgaaatcaaggtccagcccagattgtgaaacttgatgaagcaagcct |
2006665 |
T |
|
| Q |
124 |
tctagttcaccattgaagtgactaaaatctatgactttgagacttaaaaatctcgagagtagccgagaaaggaataaaacagtggaatcatgtattgtta |
223 |
Q |
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| T |
2006664 |
tcaagttcaccattgaagtggctaaaatctaagactttgagccttaaaaatcccaagagtagccgaggaaggaatggaacagtgggatcatgtactgtta |
2006565 |
T |
|
| Q |
224 |
gagagaatttaactcggtttgtaaaggaaaggaatttcttgcagaccatagaaacagactccaaatcatgtccttggtcaaggagtttgaagattgattc |
323 |
Q |
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| T |
2006564 |
gagatgctttaactcggtttgtaatggaaaggaatttcttgcagaccatagaaacagactccaaatcatctccttggccaaggaatcttaagattgattc |
2006465 |
T |
|
| Q |
324 |
ccaacattcttgtggaaaatctttcaccaacatatttgatata |
366 |
Q |
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| T |
2006464 |
ccaacattcttgaggaaaatctttcactaatatatttgatata |
2006422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 459
Target Start/End: Original strand, 1749110 - 1749187
Alignment:
| Q |
381 |
gttaagatgagaatgatcaacaaatgtaatggcttaatcatttatcaactcaataaaccaatcatatttgagtgaaagt |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| | | |||||| |||||| || |||| ||||||||| |
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| T |
1749110 |
gttaagatgagaatgatcaacaaatgtaatggcttaataatttcttagctcaatgaaccaaccacattt-agtgaaagt |
1749187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 1498419 - 1498323
Alignment:
| Q |
68 |
aaagattaatcaaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtgactaaaatctatgactttgag |
164 |
Q |
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| T |
1498419 |
aaagattaaccaaattaaggtccaatctagattataaaatttgatgaagcaagctttctagttctccaatgaagtggctaaggtctatgactttgag |
1498323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 1749015 - 1749055
Alignment:
| Q |
29 |
gttctcgcaatccatcaacaggaagtgttctttggttggaa |
69 |
Q |
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| T |
1749015 |
gttctcgcaatccatcaaggggaagtgttctctggttggaa |
1749055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 44577603 - 44577538
Alignment:
| Q |
78 |
caaatctaggtccaacccagattgtgaaatttgatgaaggatgtcttctagttcaccattgaagtg |
143 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatgaagcaagcattctagttcaccattgaagtg |
44577538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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