View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_high_5 (Length: 432)
Name: NF5450_high_5
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 5414112 - 5414522
Alignment:
| Q |
1 |
agggtcaatttgtgacatgatttttgactggttgctttcatataaacaacttgaacatagaaaaaggtgatatgccaaatatatatttaagagaaggaac |
100 |
Q |
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| T |
5414112 |
agggtcaatttgtgacatgatttttgactggttgctttcatataaacaacttgaacatagaaaaaggtgatatgccaaatatatatttaagagaaggaac |
5414211 |
T |
|
| Q |
101 |
atgcaatttttgttttatcttgtgtcagttgaatggaactcttttcaagaagtcaccgtgagattgaaggtaaaatattagagttcaaactttggagata |
200 |
Q |
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| T |
5414212 |
atgcaatttttgttttatcttgtgtcagttgaatggaactcttttcaagaagtcaccgtgagattgaaggtaaaatattagagttcaaactttggagata |
5414311 |
T |
|
| Q |
201 |
gattctgacaccaacacacgtgggagagagaagcaaacaaagatagtacaaactcacacacactcagaaactgagggggaaggaaagagaggtaaccttt |
300 |
Q |
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| T |
5414312 |
gattctgacaccaacacacgtgggagagagaagcaaacaaagatagtacaaactcacacacactcagaaactgagggggaaggaaacagaggtaaccttt |
5414411 |
T |
|
| Q |
301 |
tttgtttcatcttgtatgtatataggttggtcctctttccaatttgccattgattcttgtacatacttctgcatatctgaggtaatctgaacctttaact |
400 |
Q |
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| T |
5414412 |
tttgtttcatcttgtatgtatataggttggtcctctttccaatttgccattgattcttgtacatacttctgcatatctgaggtaatctgaacctttaact |
5414511 |
T |
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| Q |
401 |
gttgagacttg |
411 |
Q |
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| T |
5414512 |
gttgagacttg |
5414522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 52 - 320
Target Start/End: Original strand, 14087463 - 14087728
Alignment:
| Q |
52 |
tgaacatagaaaaaggtgatatgccaaatatatatttaagagaaggaacatgcaatttttgttttatcttgtgtcagttgaatggaactcttttcaagaa |
151 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || || |
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| T |
14087463 |
tgaacatagaaaaaggtgat--gccaaatatatatttaagagaaggaacatgcaatctt-gttttatcttgtgtcagttgaatggaactcttttgaataa |
14087559 |
T |
|
| Q |
152 |
gtcaccgtgagattgaaggtaaaatattagagttcaaactttggagatagattctgacaccaacacacgtgggagagagaagcaaacaaagatagt-aca |
250 |
Q |
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|||||| || ||||||||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||||||||||| | |||||||||| ||| |
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| T |
14087560 |
gtcaccatgtgattgaaggtaaaatattagaattcaaactttg----tagattatgacacaaacacacgtgggagagagaaggagacaaagataggcaca |
14087655 |
T |
|
| Q |
251 |
aa-ctc--acacacactcagaaactgag-ggggaaggaaagagaggtaaccttttttgtttcatcttgtatgta |
320 |
Q |
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|| ||| | | | | | ||| || ||| ||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
14087656 |
aaactcctatagagagt-agagaccgagaggggaaggaaaaagaggtagccttttttgtttcatcttgtatgta |
14087728 |
T |
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