View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5450_high_6 (Length: 411)
Name: NF5450_high_6
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 7196920 - 7196528
Alignment:
| Q |
1 |
gctgagaccaaaataattatccgatttataaaacatcggtcataaaactaacaatttgtctaaatcatatacatttaagtaatttagacatacaaacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7196920 |
gctgagaccaaaataattatccgatttataaaacatcggtcataaaactaacaatttgtctaaatcatatacatttaagtaatttagacatacaaacctt |
7196821 |
T |
|
| Q |
101 |
ggattgctttggcaaggagaggacgagataagtcctgaaaaatcaatccacattcaattgaacaatgactaaaacgggttagcagctttccaaggaaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7196820 |
ggattgctttggcaaggagaggacgagataagtcctgaaaaatcaatccacattcaattgaacaatgactaaaacgggttagctgctttccaaggaaaca |
7196721 |
T |
|
| Q |
201 |
taaaatttcaaaagcattgattttattctctatacaggtgaaaatctaaaaatacacaccaaatttacaatagacgaatgtccctaagaacaaacgccga |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7196720 |
taaaatttcaaaagtattgattttattctctatacaggtgaaaatctaaaaatacacaccaaatttacaatagacgaatgtccccaagaacaaacgccga |
7196621 |
T |
|
| Q |
301 |
agttgcattcaggaggccaccaatcaattgttgcgcaaatgaagttatcacctgtttcagcttttgcttgagctccatttactagtagcaaac |
393 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7196620 |
agttgcattcaggaggccaccaatcaatcgttgcgcaaatgaagttatcacctgtttcagcttttgctttagctccatttactagtagcaaac |
7196528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 159 - 393
Target Start/End: Complemental strand, 7204056 - 7203818
Alignment:
| Q |
159 |
tgaacaatgactaaaacgggttagca-gctttccaaggaaacataaaatttcaaaagcattgattttattctctatacaggtgaaaatctaaaaatacac |
257 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
7204056 |
tgaacaatgattaaaacaggttagcttgctttccaaggaaacataaaattttaaaagcattgatttcattttctatacaggtgaaaatctaaaaatacac |
7203957 |
T |
|
| Q |
258 |
accaaatttacaatagacgaatgtccctaagaacaaacgccgaagttgc---attcaggaggccaccaatcaattgttgcgcaaatgaagttatcacctg |
354 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7203956 |
accaaattgacaatagatgaatgtccccaagaacaaacgccgaagttgcataattcaggaggccaccaatcaatcgttgcgcaaatgaagttatcaccta |
7203857 |
T |
|
| Q |
355 |
tttcagcttttgcttgagctccatttactagtagcaaac |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7203856 |
tttcagcttttgcttgagctccatttactagtatcaaac |
7203818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 7210642 - 7210430
Alignment:
| Q |
22 |
cgatttataaaacatcggtcataaaactaacaatttgtctaaatcatatacatttaagtaatttagacatacaaaccttggattgctttggcaaggagag |
121 |
Q |
| |
|
|||||| ||||||||||||||| || |||||| || |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
7210642 |
cgatttttaaaacatcggtcatcaatctaacagattttctaaatcatatacatttcagtaatttagacatacagaccttggattgctttggcaaggaaag |
7210543 |
T |
|
| Q |
122 |
gacgagataagtcctgaaaaatcaatccacattcaattgaacaatgactaaaacgggttagcagctttccaaggaaacataaaatttcaaaagcattgat |
221 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
7210542 |
gatgagataagtcctgaaaaatcaatcaacattgaattgaacaatgactaaaacaggttagctgctttccaaggatacataaaattttaagagcattgat |
7210443 |
T |
|
| Q |
222 |
tttattctctata |
234 |
Q |
| |
|
|| ||| |||||| |
|
|
| T |
7210442 |
ttcattttctata |
7210430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 7204176 - 7204053
Alignment:
| Q |
17 |
ttatccgatttataaaa-catcggtcataaaactaacaatttgtctaaatcatatacatttaagtaatttagacatacaaaccttggattgctttggcaa |
115 |
Q |
| |
|
||||||||||| ||||| ||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7204176 |
ttatccgatttttaaaaacatcgatcataatactaacaaattatctaaatcatatacatttaagtaatttagacatacaaaccttggattgctttggcaa |
7204077 |
T |
|
| Q |
116 |
ggagaggacgagataagtcctgaa |
139 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
7204076 |
ggagaggatgagataagtcctgaa |
7204053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 251 - 393
Target Start/End: Complemental strand, 7210333 - 7210188
Alignment:
| Q |
251 |
aatacacaccaaatttacaatagacgaatgtccctaagaacaaacgccgaagttgcatt---caggaggccaccaatcaattgttgcgcaaatgaagtta |
347 |
Q |
| |
|
||||| |||||||||||||||||| || |||||| |||||||| |||| |||||||| || |||||||||||||||| || || |||||||||||| |
|
|
| T |
7210333 |
aatactcaccaaatttacaatagatgagtgtccccaagaacaatagccgtcgttgcatttatcatgaggccaccaatcaatagtggcacaaatgaagtta |
7210234 |
T |
|
| Q |
348 |
tcacctgtttcagcttttgcttgagctccatttactagtagcaaac |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7210233 |
tcacctgtttcagcttttgcttgagctccatttactagtagcaaac |
7210188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 45387739 - 45387669
Alignment:
| Q |
313 |
gaggccaccaatcaattgttgcgcaaatgaagttatcacctgtttcagcttttgcttgagctccatttact |
383 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| | ||||||| || ||||| |||| |||||| |
|
|
| T |
45387739 |
gaggccaccaatcaatagtagcgcaaatgaagttatcatcattttcagcaattccttgaactccgtttact |
45387669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University