View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5450_low_1 (Length: 575)
Name: NF5450_low_1
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 20 - 570
Target Start/End: Original strand, 41523974 - 41524524
Alignment:
| Q |
20 |
ttcccctcactattaccaccaccagagacacctacactcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttct |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41523974 |
ttcccctcattattaccaccaccagagacacctacactcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttct |
41524073 |
T |
|
| Q |
120 |
tgtacatagacccaagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcac |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41524074 |
tgtacatagacccgagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcac |
41524173 |
T |
|
| Q |
220 |
cgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41524174 |
cgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcgccctccaatacacgaaccttattcctaagcgcatcaaaagcattg |
41524273 |
T |
|
| Q |
320 |
ctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
41524274 |
ctatcatctaaccatttcttcttcgatttcctcagctccgaagcttcatgctccaatttaccaatcatttttctcaacacaccaagttgagtattatcct |
41524373 |
T |
|
| Q |
420 |
ccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacata |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41524374 |
ccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacata |
41524473 |
T |
|
| Q |
520 |
ttttttcttcaacttctcaacttcctcctctaattcattcttcatctcact |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41524474 |
ttttttcttcaacttctcaacttcctcctctaattcattcttcttctcact |
41524524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 543
Target Start/End: Original strand, 41515023 - 41515546
Alignment:
| Q |
20 |
ttcccctcactattaccaccaccagagacacctacactcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttct |
119 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||| ||||||| | |
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|
| T |
41515023 |
ttcccctcattactaccaccaccagaggcacctacactcttcaaaagtttggtatcatcctccaaccccgaaagtcttccaagcagtcctttaaactttt |
41515122 |
T |
|
| Q |
120 |
tgtacatagacccaagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
41515123 |
tgtacatagacccaagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctacttatagtttccttatatttcttcac |
41515222 |
T |
|
| Q |
220 |
cgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattg |
319 |
Q |
| |
|
||||||||| |||||||||| |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
41515223 |
tatttccttcaattcgccatttttaacctcaaccccagccaaagcattcttatcaccctccaatacacgaaccttatttctaagcgcatcaaaagcattg |
41515322 |
T |
|
| Q |
320 |
ctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcct |
419 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
41515323 |
ccatcatctaaccatttcttcttcgatttcctcaactccgaaacttcatgctccaatttaccaatcattttcctcaatacaccaagttcattattatccc |
41515422 |
T |
|
| Q |
420 |
ccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacata |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||| |||||||| ||||||||||| | | |
|
|
| T |
41515423 |
ccatcctcttttcattcaacttcctcaactccaaaatttcagactctaattcaccattctttcttcttaacacataaatttcattgctaccatcaaaaca |
41515522 |
T |
|
| Q |
520 |
ttttttcttcaacttctcaacttc |
543 |
Q |
| |
|
||| | ||||||||| |||||||| |
|
|
| T |
41515523 |
tttctccttcaacttttcaacttc |
41515546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 195 - 558
Target Start/End: Original strand, 41499389 - 41499752
Alignment:
| Q |
195 |
ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt |
294 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||| ||| || || || || |||||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
41499389 |
ttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagccaaatcattcttatcaccctccattacacgaacctt |
41499488 |
T |
|
| Q |
295 |
attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc |
394 |
Q |
| |
|
| | | | ||||| ||||||||||||||| |||||||| |||||| | ||||||| |||| ||||||||||||| |||||||||||||||| ||| |
|
|
| T |
41499489 |
gcttcgtacctcatcatgagcattgctatcatcaaaccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctctt |
41499588 |
T |
|
| Q |
395 |
aacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacat |
494 |
Q |
| |
|
| |||| ||||||||||||||||||||| | |||||||||| || ||||||||||||||||| | || |||| ||| || ||||| ||||||||||| |
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|
| T |
41499589 |
agcacaacaagttcattattatcctccagcatcttttcatttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacac |
41499688 |
T |
|
| Q |
495 |
caatttcatagctaccatcaacatattttttcttcaacttctcaacttcctcctctaattcatt |
558 |
Q |
| |
|
||| ||||| ||||||||||||| ||| | |||||| ||| |||||| |||||| |||||| |
|
|
| T |
41499689 |
caacttcattgctaccatcaacaagtttctccttcaaattcataacttcaacctctagttcatt |
41499752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 195 - 500
Target Start/End: Original strand, 41503582 - 41503887
Alignment:
| Q |
195 |
ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt |
294 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||| ||| || ||| || || |||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
41503582 |
ttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatcttaaggtcagccaaatcatttttatcaccctccagaacatgaacctt |
41503681 |
T |
|
| Q |
295 |
attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc |
394 |
Q |
| |
|
| | |||| ||||| |||| |||||| |||||| |||| |||||| | |||| | |||| ||||||||||||| |||||||||||||||| ||| |
|
|
| T |
41503682 |
gcttcgaagctcatcatgagcactgctattttctaacaattttttcttcaacctccttaactccaaaacttcatgctctaatttaccaatcatttctctt |
41503781 |
T |
|
| Q |
395 |
aacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacat |
494 |
Q |
| |
|
| |||| ||||||| ||||||||||||| | |||||||||| || |||||||||||||||| | || |||||| | |||| |||| ||||||||||||| |
|
|
| T |
41503782 |
agcacaacaagttcgttattatcctccaccatcttttcatttaatttcctcaactccaaaacttcagactctagtttaccagtcttacttcttaacacat |
41503881 |
T |
|
| Q |
495 |
caattt |
500 |
Q |
| |
|
|||||| |
|
|
| T |
41503882 |
caattt |
41503887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 41519327 - 41519439
Alignment:
| Q |
221 |
gtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgc |
320 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||||||||| |||| || ||| |||||||||||| |||| | | | |||| |||||| |||||| | |
|
|
| T |
41519327 |
gtttccttcaattcgccatttttaatctcaattccagccaaagcattcttttcaacctccaatacaccaaccatgcttcgaagctcatcaagagcattac |
41519426 |
T |
|
| Q |
321 |
tatcatctaacca |
333 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41519427 |
tatcatctaacca |
41519439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 336
Target Start/End: Original strand, 41503897 - 41504074
Alignment:
| Q |
159 |
catcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagc |
258 |
Q |
| |
|
|||||||||| || || |||||||||| |||| |||||||| ||||| ||| |||| ||| |||||| ||||| |||| || || || | |||| |
|
|
| T |
41503897 |
catcagccaatttgctgttttctttcctcaactcgcttatagttgccaaatacttcgtcacagttgccttcaattcgctatttttactcttaatttcagc |
41503996 |
T |
|
| Q |
259 |
caaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccattt |
336 |
Q |
| |
|
|||| ||||||| ||| |||||||||||| |||||| | |||| |||||| |||||| |||||||| |||||||| |
|
|
| T |
41503997 |
caaatcatttttttcatcctccaatacaccaaccttcctttgaagctcatcaagagcatttctatcatcaaaccattt |
41504074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 41503473 - 41503548
Alignment:
| Q |
71 |
gtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatatctcaa |
146 |
Q |
| |
|
|||||||||||||| || |||| ||||||| ||||||||| ||||| ||||| | ||||||||| ||||| |||| |
|
|
| T |
41503473 |
gtatcatcctccaaccttgaaactcttccagtcagtcctctgaactttttgtaaaaagacccaagtaatatatcaa |
41503548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 503
Target Start/End: Complemental strand, 41702966 - 41702837
Alignment:
| Q |
374 |
aatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcac |
473 |
Q |
| |
|
|||| ||||||||||||||| |||||||| | |||| ||| ||| ||| || |||| || |||||| |||||||||||| | | ||||| ||| |
|
|
| T |
41702966 |
aattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaa |
41702867 |
T |
|
| Q |
474 |
cattctttcttcttaacacatcaatttcat |
503 |
Q |
| |
|
|| ||||||||||||||||||||| ||||| |
|
|
| T |
41702866 |
caatctttcttcttaacacatcaacttcat |
41702837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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