View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_low_12 (Length: 288)
Name: NF5450_low_12
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 10174438 - 10174181
Alignment:
| Q |
13 |
aatattattggtgcaatgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgcgtatga |
112 |
Q |
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| T |
10174438 |
aatattattggtgcaatgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgtgtatga |
10174339 |
T |
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| Q |
113 |
cccgaaagctaccaccttctttatctcatttagatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttg |
212 |
Q |
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| T |
10174338 |
cccgaaagctaccaccttctttgtctcatttggatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttg |
10174239 |
T |
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| Q |
213 |
ctcgggagggaagattattgcatccactgctctcattgagcttcattcaagtgatgta |
270 |
Q |
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| T |
10174238 |
ctcgggagggaagattattgcatccactgctctcattgagcttcattcaagtgatgta |
10174181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 270
Target Start/End: Complemental strand, 1238776 - 1238534
Alignment:
| Q |
28 |
atgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgcgtatgacccgaaagctaccac |
127 |
Q |
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| T |
1238776 |
atgcattcagagatcaacaaattgaggtctatttctgaggatatttcacagtatggctttttgcatcgtgtttggttgcgtatgacacgaaagctaccac |
1238677 |
T |
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| Q |
128 |
cttctttatctcatttagatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttgctcgggagggaagat |
227 |
Q |
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| T |
1238676 |
cttctttgtctcatttggatggattgaattgggaggttttgatcgtgactggtgtccctgttcgttattttcctgctttagtttgtccgggagggaagat |
1238577 |
T |
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| Q |
228 |
tattgcatccactgctctcattgagcttcattcaagtgatgta |
270 |
Q |
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| T |
1238576 |
tattgcatccactgctttcattgagcttcatccaagtgatgta |
1238534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 1173923 - 1174180
Alignment:
| Q |
13 |
aatattattggtgcaatgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgcgtatga |
112 |
Q |
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| T |
1173923 |
aatattgttggcgccatgcattcagagatcaacaaattgaggtctatttctgatgatatttctcagtatggcttttggcaccgtgtttggttgcgtatga |
1174022 |
T |
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| Q |
113 |
cccgaaagctaccaccttctttatctcatttagatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttg |
212 |
Q |
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| T |
1174023 |
cccgaaagctaccaccttctttgtctcatttggatggattgaattgggaggttttgatcgtgactggtgtccctgttacttcttttccttctttagtttg |
1174122 |
T |
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| Q |
213 |
ctcgggagggaagattattgcatccactgctctcattgagcttcattcaagtgatgta |
270 |
Q |
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|||| ||||||||||||||||||||| || |||||||||||||| ||| ||||||| |
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| T |
1174123 |
tccgggtgggaagattattgcatccactactttcattgagcttcatccaactgatgta |
1174180 |
T |
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