View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5450_low_15 (Length: 260)
Name: NF5450_low_15
Description: NF5450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5450_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 29275516 - 29275757
Alignment:
| Q |
1 |
tttgtagacatgtttttaattccaaagttttgtaaccgcttttcctaactatttttgtttgaacacttatttgccaagtcaatatgtataacgttcattc |
100 |
Q |
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| T |
29275516 |
tttgtagacatgtttttaattccaaagttttgtaaccgcttttcttaactatttt-gtttcagcacttatttgccaagtcaat--gtataacgttcattc |
29275612 |
T |
|
| Q |
101 |
tagcttgactaaacagaaaaatgctgcctataaaatgaatactcacgtagtgaattaaaagggnnnnnnnncacatggctttgagtagtatcaaaacaag |
200 |
Q |
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| T |
29275613 |
tagcttgactaaacagaaaaatgctgcctgtaaaatgaatactcacgtagtgaattaaaaggg-tttttttcacatggctttgagtagtatcaaaacaag |
29275711 |
T |
|
| Q |
201 |
aaacatgtccctcacttttaatggtttcttaataatttttcttgtc |
246 |
Q |
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| T |
29275712 |
aaacatgtccctcacttttaatggtttcttaataatttttcttgtc |
29275757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 29260774 - 29260906
Alignment:
| Q |
97 |
attctagcttgactaaacagaaaaatgctgcctataaaatgaatactcacgtagtgaattaaaagggnnnnnnnncacatggctttgagtagtatcaaaa |
196 |
Q |
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| T |
29260774 |
attctagcttgactaaacagaaaaatgctgcctataaaatgaatactcacgtagtgaattaaaaggg-tttttttcacttggctttgggtagtatcaaga |
29260872 |
T |
|
| Q |
197 |
caagaaacatgtccctcacttttaatggtttctt |
230 |
Q |
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| T |
29260873 |
caagaaacatgtccctcacttttaatggtttctt |
29260906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 29260542 - 29260587
Alignment:
| Q |
53 |
ttttgtttgaacacttatttgccaagtcaatatgtataacgttcatt |
99 |
Q |
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| T |
29260542 |
ttttgtttgagcacttatttgccaagtcaa-atgtataacgttcatt |
29260587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 6660735 - 6660698
Alignment:
| Q |
6 |
agacatgtttttaattccaaagttttgtaaccgctttt |
43 |
Q |
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| T |
6660735 |
agacatgtttttaattccaaagttttgtaaccgttttt |
6660698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 6664325 - 6664288
Alignment:
| Q |
6 |
agacatgtttttaattccaaagttttgtaaccgctttt |
43 |
Q |
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| T |
6664325 |
agacatgtttttaattccaaagttttgtaaccgttttt |
6664288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 21182970 - 21182933
Alignment:
| Q |
6 |
agacatgtttttaattccaaagttttgtaaccgctttt |
43 |
Q |
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|||||| || |||||||||||||||||||||||||||| |
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| T |
21182970 |
agacatcttcttaattccaaagttttgtaaccgctttt |
21182933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37006389 - 37006424
Alignment:
| Q |
1 |
tttgtagacatgtttttaattccaaagttttgtaacc |
37 |
Q |
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| T |
37006389 |
tttgtagacatgtttttaattccaaa-ttttgtaacc |
37006424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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